1 HisKA#1
211-271 aa · 61 aa · 14.2% of protein
Raw token
HisKA:211:0.00000000000000915:271:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU08_RS12815
Histidine kinase, Classic
Bacillus sp. TH23 · GCF_016650995
ClassHKTypeClassicLength429 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_016650995#JFU08_RS12815Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length429 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 429 aa (38.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa429 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
314-418 aa · 105 aa · 24.5% of protein
Raw token
HATPase_c:314:2.21e-24:418:108:109- Raw architecture: HisKA:211:0.00000000000000915:271:61:64#HATPase_c:314:2.21e-24:418:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_016650995::NZ_JAEKES010000004.1::G00023
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2341784-2343073Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU08_12815RefSeq proteinWP_201034274.1
Context group ID
GCF_016650995::NZ_JAEKES010000004.1::G00023Context members
JFU08_RS12815
Partner locus tags
JFU08_RS12815
Partner old locus tags
JFU08_12815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201034274.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU08_RS12815Primary locus identifier stored in the genes table.
Old locus tagJFU08_12815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKES010000004.1Sequence record reported by the local genomic context database.
Genomic interval2 341 784-2 343 073 nt1 290 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 341 784-2 343 073 ntGCF_016650995::NZ_JAEKES010000004.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650995::NZ_JAEKES010000004.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKES010000004.1All displayed genes belong to this local TCS context.
Neighborhood span2 341 784-2 343 073 nt1 290 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 341 784 nt2 343 073 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
JFU08_RS12815GCF_016650995#JFU08_RS12815
HKClassicCurrent focus
2 341 784-2 343 073 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650995#JFU08_RS12815The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2183497
Simplified PFAM architecture for HKOC_2183497
PFAM domain coverage: 166 / 429 aa (38.7%)
1 aa429 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[211-271] | HATPase_c[314-418]
- Domain count: 2
- Matched identifier: HKOC_2183497
- Positioned domains: HisKA 211-271 ; HATPase_c 314-418
Cluster members and taxonomy
Representative gene: GCF_016650995#JFU08_RS12815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 389 · GCF_016650995
AssemblyASM1665099v1 · Contighaploid
Genome composition5 806 530 bp · 35,5% GCBacillus sp. TH23
Signal transduction countsGenes 113 · HK 60 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key