1 Response_reg#1
6-113 aa · 108 aa · 48.4% of protein
Raw token
Response_reg:6:8.96e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU08_RS07935
Response regulator OmpR family
Bacillus sp. TH23 · GCF_016650995
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650995#JFU08_RS07935Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 223 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-217 aa · 72 aa · 32.3% of protein
Raw token
Trans_reg_C:146:0.00000000000000102:217:75:77- Raw architecture: Response_reg:6:8.96e-28:113:111:111#Trans_reg_C:146:0.00000000000000102:217:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650995::NZ_JAEKES010000004.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1362263-1363932Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU08_07935RefSeq proteinWP_002032977.1
Context group ID
GCF_016650995::NZ_JAEKES010000004.1::G00016Context members
JFU08_RS07930JFU08_RS07935
Partner locus tags
JFU08_RS07930JFU08_RS07935
Partner old locus tags
JFU08_07930JFU08_07935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002032977.1Primary protein accession used for annex mappings.
UniProt accessionR8MZJ3Primary UniProt accession resolved in the annex database.
UniProt IDR8MZJ3_BACCXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU08_RS07935Primary locus identifier stored in the genes table.
Old locus tagJFU08_07935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKES010000004.1Sequence record reported by the local genomic context database.
Genomic interval1 363 261-1 363 932 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 362 263-1 363 932 ntGCF_016650995::NZ_JAEKES010000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650995::NZ_JAEKES010000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKES010000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 362 263-1 363 932 nt1 670 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 362 263 nt1 363 932 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU08_RS07930GCF_016650995#JFU08_RS07930
HKClassic
1 362 263-1 363 264 nt · Reverse (-)
JFU08_RS07935GCF_016650995#JFU08_RS07935
RROmpRCurrent focus
1 363 261-1 363 932 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290895#III_RS12120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588523
Simplified PFAM architecture for RROC_1588523
PFAM domain coverage: 179 / 223 aa (80.3%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-112] | Trans_reg_C[146-217]
- Domain count: 2
- Matched identifier: RROC_1588523
- Positioned domains: Response_reg 6-112 ; Response_reg 6-112 ; Trans_reg_C 146-217 ; Trans_reg_C 146-217
Cluster members and taxonomy
Representative gene: GCF_000290895#III_RS12120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 389 · GCF_016650995
AssemblyASM1665099v1 · Contighaploid
Genome composition5 806 530 bp · 35,5% GCBacillus sp. TH23
Signal transduction countsGenes 113 · HK 60 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key