1 HAMP#1
55-122 aa · 68 aa · 20.4% of protein
Raw token
HAMP:55:0.000000272:122:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU08_RS07930
Histidine kinase, Classic
Bacillus sp. TH23 · GCF_016650995
ClassHKTypeClassicLength333 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650995#JFU08_RS07930Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage204 / 333 aa (61.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-190 aa · 54 aa · 16.2% of protein
Raw token
HisKA:137:0.0000000087:190:54:643 HATPase_c#3
246-327 aa · 82 aa · 24.6% of protein
Raw token
HATPase_c:246:0.00000000363:327:103:109- Raw architecture: HAMP:55:0.000000272:122:68:69#HisKA:137:0.0000000087:190:54:64#HATPase_c:246:0.00000000363:327:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650995::NZ_JAEKES010000004.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1362263-1363932Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU08_07930RefSeq proteinWP_201033999.1
Context group ID
GCF_016650995::NZ_JAEKES010000004.1::G00016Context members
JFU08_RS07930JFU08_RS07935
Partner locus tags
JFU08_RS07930JFU08_RS07935
Partner old locus tags
JFU08_07930JFU08_07935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201033999.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU08_RS07930Primary locus identifier stored in the genes table.
Old locus tagJFU08_07930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKES010000004.1Sequence record reported by the local genomic context database.
Genomic interval1 362 263-1 363 264 nt1 002 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 362 263-1 363 932 ntGCF_016650995::NZ_JAEKES010000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650995::NZ_JAEKES010000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKES010000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 362 263-1 363 932 nt1 670 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 362 263 nt1 363 932 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU08_RS07930GCF_016650995#JFU08_RS07930
HKClassicCurrent focus
1 362 263-1 363 264 nt · Reverse (-)
JFU08_RS07935GCF_016650995#JFU08_RS07935
RROmpR
1 363 261-1 363 932 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650995#JFU08_RS07930The current gene is the representative for this cluster.
PFAM architectureHisKA1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2852359
Simplified PFAM architecture for HKOC_2852359
PFAM domain coverage: 54 / 333 aa (16.2%)
1 aa333 aa
HisKA
- Simplified architecture: HisKA
- Raw architecture: HisKA[137-190]
- Domain count: 1
- Matched identifier: HKOC_2852359
- Positioned domains: HisKA 137-190
Cluster members and taxonomy
Representative gene: GCF_016650995#JFU08_RS07930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 389 · GCF_016650995
AssemblyASM1665099v1 · Contighaploid
Genome composition5 806 530 bp · 35,5% GCBacillus sp. TH23
Signal transduction countsGenes 113 · HK 60 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key