1 HAMP#1
198-268 aa · 71 aa · 14.0% of protein
Raw token
HAMP:198:0.000000163:268:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU20_RS00805
Histidine kinase, Classic
Bacillus sp. TH30 · GCF_016650875
ClassHKTypeClassicLength506 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650875#JFU20_RS00805Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length506 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 506 aa (49.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
279-346 aa · 68 aa · 13.4% of protein
Raw token
HisKA:279:1.26e-16:346:68:643 HATPase_c#3
389-498 aa · 110 aa · 21.7% of protein
Raw token
HATPase_c:389:2.15e-31:498:110:109- Raw architecture: HAMP:198:0.000000163:268:71:69#HisKA:279:1.26e-16:346:68:64#HATPase_c:389:2.15e-31:498:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650875::NZ_JAEKEY010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span159593-161796Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU20_00805RefSeq proteinWP_201038184.1
Context group ID
GCF_016650875::NZ_JAEKEY010000001.1::G00003Context members
JFU20_RS00800JFU20_RS00805
Partner locus tags
JFU20_RS00800JFU20_RS00805
Partner old locus tags
JFU20_00800JFU20_00805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201038184.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU20_RS00805Primary locus identifier stored in the genes table.
Old locus tagJFU20_00805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKEY010000001.1Sequence record reported by the local genomic context database.
Genomic interval160 276-161 796 nt1 521 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span159 593-161 796 ntGCF_016650875::NZ_JAEKEY010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650875::NZ_JAEKEY010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKEY010000001.1All displayed genes belong to this local TCS context.
Neighborhood span159 593-161 796 nt2 204 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
159 593 nt161 796 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU20_RS00800GCF_016650875#JFU20_RS00800
RROmpR
159 593-160 279 nt · Forward (+)
JFU20_RS00805GCF_016650875#JFU20_RS00805
HKClassicCurrent focus
160 276-161 796 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650875#JFU20_RS00805The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1446169
Simplified PFAM architecture for HKOC_1446169
PFAM domain coverage: 177 / 506 aa (35.0%)
1 aa506 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[280-345] | HATPase_c[389-499]
- Domain count: 2
- Matched identifier: HKOC_1446169
- Positioned domains: HisKA 280-345 ; HATPase_c 389-499
Cluster members and taxonomy
Representative gene: GCF_016650875#JFU20_RS00805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 395 · GCF_016650875
AssemblyASM1665087v1 · Contighaploid
Genome composition5 897 091 bp · 35,5% GCBacillus sp. TH30
Signal transduction countsGenes 124 · HK 65 · RR 59CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key