1 Response_reg#1
6-115 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:6:6.1e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
JFU23_RS00560
Response regulator OmpR family
Bacillus sp. TH50 · GCF_016650565
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016650565#JFU23_RS00560Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 221 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-219 aa · 70 aa · 31.7% of protein
Raw token
Trans_reg_C:150:1.78e-30:219:75:77- Raw architecture: Response_reg:6:6.1e-35:115:111:111#Trans_reg_C:150:1.78e-30:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016650565::NZ_JAEKFM010000003.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span122070-124200Genomic interval covered by the local TCS group.
Identifiers
Old locus tagJFU23_00560RefSeq proteinWP_201031078.1
Context group ID
GCF_016650565::NZ_JAEKFM010000003.1::G00002Context members
JFU23_RS00555JFU23_RS00560
Partner locus tags
JFU23_RS00555JFU23_RS00560
Partner old locus tags
JFU23_00555JFU23_00560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_201031078.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagJFU23_RS00560Primary locus identifier stored in the genes table.
Old locus tagJFU23_00560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAEKFM010000003.1Sequence record reported by the local genomic context database.
Genomic interval123 535-124 200 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span122 070-124 200 ntGCF_016650565::NZ_JAEKFM010000003.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016650565::NZ_JAEKFM010000003.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAEKFM010000003.1All displayed genes belong to this local TCS context.
Neighborhood span122 070-124 200 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
122 070 nt124 200 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
JFU23_RS00555GCF_016650565#JFU23_RS00555
HKClassic
122 070-123 542 nt · Reverse (-)
JFU23_RS00560GCF_016650565#JFU23_RS00560
RROmpRCurrent focus
123 535-124 200 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016650565#JFU23_RS00560The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1695412
Simplified PFAM architecture for RROC_1695412
PFAM domain coverage: 178 / 221 aa (80.5%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[150-218]
- Domain count: 2
- Matched identifier: RROC_1695412
- Positioned domains: Response_reg 6-114 ; Trans_reg_C 150-218
Cluster members and taxonomy
Representative gene: GCF_016650565#JFU23_RS00560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 796 414 · GCF_016650565
AssemblyASM1665056v1 · Contighaploid
Genome composition5 932 849 bp · 35,5% GCBacillus sp. TH50
Signal transduction countsGenes 112 · HK 60 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key