1 Response_reg#1
3-112 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:3:3.22e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IBC70_RS02810
Response regulator OmpR family
Bifidobacterium longum subsp. longum · GCF_016069995
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016069995#IBC70_RS02810Stable P2CS identifier used across views.
GenomeGCF_016069995Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.1% of protein
Raw token
Trans_reg_C:151:2.56e-27:225:75:77- Raw architecture: Response_reg:3:3.22e-33:112:111:111#Trans_reg_C:151:2.56e-27:225:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016069995::NZ_JACTOE010000002.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span286946-290498Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIBC70_02810RefSeq proteinWP_082253901.1
Context group ID
GCF_016069995::NZ_JACTOE010000002.1::G00003Context members
IBC70_RS02810IBC70_RS02815
Partner locus tags
IBC70_RS02810IBC70_RS02815
Partner old locus tags
IBC70_02810IBC70_02815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_082253901.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIBC70_RS02810Primary locus identifier stored in the genes table.
Old locus tagIBC70_02810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACTOE010000002.1Sequence record reported by the local genomic context database.
Genomic interval286 946-287 650 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span286 946-290 498 ntGCF_016069995::NZ_JACTOE010000002.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016069995::NZ_JACTOE010000002.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACTOE010000002.1All displayed genes belong to this local TCS context.
Neighborhood span286 946-290 498 nt3 553 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
286 946 nt290 498 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IBC70_RS02810GCF_016069995#IBC70_RS02810
RROmpRCurrent focus
286 946-287 650 nt · Reverse (-)
IBC70_RS02815GCF_016069995#IBC70_RS02815
HKClassic
287 655-290 498 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001892965#B0296_RS04590Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1052579
Simplified PFAM architecture for RROC_1052579
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1052579
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_001892965#B0296_RS04590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_016069995
AssemblyASM1606999v1 · Contighaploid
Genome composition2 240 429 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key