1 HisKA#1
180-245 aa · 66 aa · 14.9% of protein
Raw token
HisKA:180:0.000000000237:245:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IBC70_RS00905
Histidine kinase, Classic
Bifidobacterium longum subsp. longum · GCF_016069995
ClassHKTypeClassicLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_016069995#IBC70_RS00905Stable P2CS identifier used across views.
GenomeGCF_016069995Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 443 aa (40.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa443 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-428 aa · 113 aa · 25.5% of protein
Raw token
HATPase_c:316:7.81e-29:428:113:109- Raw architecture: HisKA:180:0.000000000237:245:66:64#HATPase_c:316:7.81e-29:428:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_016069995::NZ_JACTOE010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span233932-236166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIBC70_00905RefSeq proteinWP_131225893.1
Context group ID
GCF_016069995::NZ_JACTOE010000001.1::G00001Context members
IBC70_RS00900IBC70_RS00905
Partner locus tags
IBC70_RS00900IBC70_RS00905
Partner old locus tags
IBC70_00900IBC70_00905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131225893.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIBC70_RS00905Primary locus identifier stored in the genes table.
Old locus tagIBC70_00905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACTOE010000001.1Sequence record reported by the local genomic context database.
Genomic interval234 835-236 166 nt1 332 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span233 932-236 166 ntGCF_016069995::NZ_JACTOE010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_016069995::NZ_JACTOE010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACTOE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span233 932-236 166 nt2 235 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
233 932 nt236 166 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IBC70_RS00900GCF_016069995#IBC70_RS00900
RROmpR
233 932-234 636 nt · Reverse (-)
IBC70_RS00905GCF_016069995#IBC70_RS00905
HKClassicCurrent focus
234 835-236 166 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004333205#MCC10078_RS01970Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2044434
Simplified PFAM architecture for HKOC_2044434
PFAM domain coverage: 176 / 443 aa (39.7%)
1 aa443 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[180-244] | HATPase_c[317-427]
- Domain count: 2
- Matched identifier: HKOC_2044434
- Positioned domains: HisKA 180-244 ; HATPase_c 317-427
Cluster members and taxonomy
Representative gene: GCF_004333205#MCC10078_RS01970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_016069995
AssemblyASM1606999v1 · Contighaploid
Genome composition2 240 429 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 24 · HK 11 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key