1 Response_reg#1
17-126 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:17:5.27e-34:126:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V68_RS07955
Response regulator OmpR family
Roseburia faecis · GCF_015669935
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669935#I4V68_RS07955Stable P2CS identifier used across views.
GenomeGCF_015669935Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 236 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-232 aa · 73 aa · 30.9% of protein
Raw token
Trans_reg_C:160:4.31e-25:232:75:77- Raw architecture: Response_reg:17:5.27e-34:126:110:111#Trans_reg_C:160:4.31e-25:232:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669935::NZ_JADPAX010000012.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99029-100782Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669935::NZ_JADPAX010000012.1::G00006Context members
I4V68_RS07950I4V68_RS07955
Partner locus tags
I4V68_RS07950I4V68_RS07955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138346155.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V68_RS07955Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPAX010000012.1Sequence record reported by the local genomic context database.
Genomic interval100 072-100 782 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span99 029-100 782 ntGCF_015669935::NZ_JADPAX010000012.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669935::NZ_JADPAX010000012.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPAX010000012.1All displayed genes belong to this local TCS context.
Neighborhood span99 029-100 782 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 029 nt100 782 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V68_RS07950GCF_015669935#I4V68_RS07950
HKClassic
99 029-100 072 nt · Reverse (-)
I4V68_RS07955GCF_015669935#I4V68_RS07955
RROmpRCurrent focus
100 072-100 782 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845255#FGQ84_RS07900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0997126
Simplified PFAM architecture for RROC_0997126
PFAM domain coverage: 182 / 236 aa (77.1%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[17-125] | Trans_reg_C[160-232]
- Domain count: 2
- Matched identifier: RROC_0997126
- Positioned domains: Response_reg 17-125 ; Response_reg 17-125 ; Trans_reg_C 160-232 ; Trans_reg_C 160-232
Cluster members and taxonomy
Representative gene: GCF_005845255#FGQ84_RS07900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015669935
AssemblyASM1566993v1 · Scaffoldhaploid
Genome composition3 630 746 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 109 · HK 47 · RR 60CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key