1 Response_reg#1
5-117 aa · 113 aa · 21.2% of protein
Raw token
Response_reg:5:1.14e-25:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V68_RS02045
Response regulator, unclassified
Roseburia faecis · GCF_015669935
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669935#I4V68_RS02045Stable P2CS identifier used across views.
GenomeGCF_015669935Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 534 aa (35.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
435-477 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:435:0.00000194:477:43:423 HTH_AraC#3
497-527 aa · 31 aa · 5.8% of protein
Raw token
HTH_AraC:497:0.0000000292:527:31:42- Raw architecture: Response_reg:5:1.14e-25:117:113:111#HTH_AraC:435:0.00000194:477:43:42#HTH_AraC:497:0.0000000292:527:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669935::NZ_JADPAX010000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60448-63838Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669935::NZ_JADPAX010000003.1::G00035Context members
I4V68_RS02040I4V68_RS02045
Partner locus tags
I4V68_RS02040I4V68_RS02045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022045920.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V68_RS02045Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPAX010000003.1Sequence record reported by the local genomic context database.
Genomic interval62 234-63 838 nt1 605 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 448-63 838 ntGCF_015669935::NZ_JADPAX010000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669935::NZ_JADPAX010000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPAX010000003.1All displayed genes belong to this local TCS context.
Neighborhood span60 448-63 838 nt3 391 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 448 nt63 838 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V68_RS02040GCF_015669935#I4V68_RS02040
HKClassic
60 448-62 253 nt · Reverse (-)
I4V68_RS02045GCF_015669935#I4V68_RS02045
RRunclassifiedCurrent focus
62 234-63 838 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845255#FGQ84_RS02025Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103813
Simplified PFAM architecture for RROC_0103813
PFAM domain coverage: 322 / 534 aa (60.3%)
1 aa534 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-115] | GGDEF_2[158-289] | HTH_18[449-527]
- Domain count: 3
- Matched identifier: RROC_0103813
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; GGDEF_2 158-289 ; GGDEF_2 158-289 ; HTH_18 449-527 ; HTH_18 449-527
Cluster members and taxonomy
Representative gene: GCF_005845255#FGQ84_RS02025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015669935
AssemblyASM1566993v1 · Scaffoldhaploid
Genome composition3 630 746 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 109 · HK 47 · RR 60CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key