1 Response_reg#1
135-246 aa · 112 aa · 44.1% of protein
Raw token
Response_reg:135:2.51e-23:246:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V68_RS07775
Response regulator, unclassified
Roseburia faecis · GCF_015669935
ClassRRTypeunclassifiedLength254 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015669935#I4V68_RS07775Stable P2CS identifier used across views.
GenomeGCF_015669935Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length254 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 254 aa (44.1%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa254 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:135:2.51e-23:246:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015669935::NZ_JADPAX010000012.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span67526-68290Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669935::NZ_JADPAX010000012.1::G00005Context members
I4V68_RS07775
Partner locus tags
I4V68_RS07775
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243130454.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V68_RS07775Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPAX010000012.1Sequence record reported by the local genomic context database.
Genomic interval67 526-68 290 nt765 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span67 526-68 290 ntGCF_015669935::NZ_JADPAX010000012.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669935::NZ_JADPAX010000012.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPAX010000012.1All displayed genes belong to this local TCS context.
Neighborhood span67 526-68 290 nt765 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 526 nt68 290 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4V68_RS07775GCF_015669935#I4V68_RS07775
RRunclassifiedCurrent focus
67 526-68 290 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845255#FGQ84_RS07725Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0690024
Simplified PFAM architecture for RROC_0690024
PFAM domain coverage: 111 / 254 aa (43.7%)
1 aa254 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[135-245]
- Domain count: 1
- Matched identifier: RROC_0690024
- Positioned domains: Response_reg 135-245 ; Response_reg 135-245
Cluster members and taxonomy
Representative gene: GCF_005845255#FGQ84_RS07725
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015669935
AssemblyASM1566993v1 · Scaffoldhaploid
Genome composition3 630 746 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 109 · HK 47 · RR 60CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key