1 HisKA#1
619-684 aa · 66 aa · 7.8% of protein
Raw token
HisKA:619:8.61e-18:684:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V68_RS06245
Histidine kinase, Classic
Roseburia faecis · GCF_015669935
ClassHKTypeClassicLength844 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669935#I4V68_RS06245Stable P2CS identifier used across views.
GenomeGCF_015669935Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length844 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 844 aa (18.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa844 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
731-822 aa · 92 aa · 10.9% of protein
Raw token
HATPase_c:731:4.34e-17:822:96:109- Raw architecture: HisKA:619:8.61e-18:684:66:64#HATPase_c:731:4.34e-17:822:96:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669935::NZ_JADPAX010000009.1::G00067
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88460-91685Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669935::NZ_JADPAX010000009.1::G00067Context members
I4V68_RS06245I4V68_RS06250
Partner locus tags
I4V68_RS06245I4V68_RS06250
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055263367.1Primary protein accession used for annex mappings.
UniProt accessionA0A173TWC1Primary UniProt accession resolved in the annex database.
UniProt IDA0A173TWC1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V68_RS06245Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPAX010000009.1Sequence record reported by the local genomic context database.
Genomic interval88 460-90 994 nt2 535 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 460-91 685 ntGCF_015669935::NZ_JADPAX010000009.1::G00067
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669935::NZ_JADPAX010000009.1::G00067Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPAX010000009.1All displayed genes belong to this local TCS context.
Neighborhood span88 460-91 685 nt3 226 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 460 nt91 685 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V68_RS06245GCF_015669935#I4V68_RS06245
HKClassicCurrent focus
88 460-90 994 nt · Reverse (-)
I4V68_RS06250GCF_015669935#I4V68_RS06250
RROmpR
90 987-91 685 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405615#ARB75_RS12405Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0502649
Simplified PFAM architecture for HKOC_0502649
PFAM domain coverage: 158 / 844 aa (18.7%)
1 aa844 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[619-683] | HATPase_c[731-823]
- Domain count: 2
- Matched identifier: HKOC_0502649
- Positioned domains: HisKA 619-683 ; HATPase_c 731-823
Cluster members and taxonomy
Representative gene: GCF_001405615#ARB75_RS12405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015669935
AssemblyASM1566993v1 · Scaffoldhaploid
Genome composition3 630 746 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 109 · HK 47 · RR 60CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key