1 Response_reg#1
4-124 aa · 121 aa · 22.6% of protein
Raw token
Response_reg:4:2.39e-31:124:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V68_RS04760
Response regulator, unclassified
Roseburia faecis · GCF_015669935
ClassRRTypeunclassifiedLength536 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015669935#I4V68_RS04760Stable P2CS identifier used across views.
GenomeGCF_015669935Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length536 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage200 / 536 aa (37.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa536 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
442-483 aa · 42 aa · 7.8% of protein
Raw token
HTH_AraC:442:0.0000242:483:42:423 HTH_AraC#3
497-533 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:497:0.000000407:533:37:42- Raw architecture: Response_reg:4:2.39e-31:124:121:111#HTH_AraC:442:0.0000242:483:42:42#HTH_AraC:497:0.000000407:533:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015669935::NZ_JADPAX010000007.1::G00060
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span29844-31454Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669935::NZ_JADPAX010000007.1::G00060Context members
I4V68_RS04760
Partner locus tags
I4V68_RS04760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022044791.1Primary protein accession used for annex mappings.
UniProt accessionA0A0M6WA11Primary UniProt accession resolved in the annex database.
UniProt IDA0A0M6WA11_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V68_RS04760Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPAX010000007.1Sequence record reported by the local genomic context database.
Genomic interval29 844-31 454 nt1 611 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 844-31 454 ntGCF_015669935::NZ_JADPAX010000007.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669935::NZ_JADPAX010000007.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPAX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span29 844-31 454 nt1 611 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 844 nt31 454 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4V68_RS04760GCF_015669935#I4V68_RS04760
RRunclassifiedCurrent focus
29 844-31 454 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406815#M72_RS00750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0098489
Simplified PFAM architecture for RROC_0098489
PFAM domain coverage: 190 / 536 aa (35.4%)
1 aa536 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[458-534]
- Domain count: 2
- Matched identifier: RROC_0098489
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 458-534 ; HTH_18 458-534
Cluster members and taxonomy
Representative gene: GCF_001406815#M72_RS00750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015669935
AssemblyASM1566993v1 · Scaffoldhaploid
Genome composition3 630 746 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 109 · HK 47 · RR 60CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key