1 Response_reg#1
3-119 aa · 117 aa · 35.0% of protein
Raw token
Response_reg:3:8.83e-29:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V68_RS04680
Response regulator, unclassified
Roseburia faecis · GCF_015669935
ClassRRTypeunclassifiedLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669935#I4V68_RS04680Stable P2CS identifier used across views.
GenomeGCF_015669935Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 334 aa (57.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
241-277 aa · 37 aa · 11.1% of protein
Raw token
HTH_AraC:241:0.00000000281:277:37:423 HTH_AraC#3
291-329 aa · 39 aa · 11.7% of protein
Raw token
HTH_AraC:291:0.00000354:329:39:42- Raw architecture: Response_reg:3:8.83e-29:119:117:111#HTH_AraC:241:0.00000000281:277:37:42#HTH_AraC:291:0.00000354:329:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669935::NZ_JADPAX010000007.1::G00058
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7766-10568Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669935::NZ_JADPAX010000007.1::G00058Context members
I4V68_RS04675I4V68_RS04680
Partner locus tags
I4V68_RS04675I4V68_RS04680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138345526.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V68_RS04680Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPAX010000007.1Sequence record reported by the local genomic context database.
Genomic interval9 564-10 568 nt1 005 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 766-10 568 ntGCF_015669935::NZ_JADPAX010000007.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669935::NZ_JADPAX010000007.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPAX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span7 766-10 568 nt2 803 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 766 nt10 568 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V68_RS04675GCF_015669935#I4V68_RS04675
HKClassic
7 766-9 586 nt · Forward (+)
I4V68_RS04680GCF_015669935#I4V68_RS04680
RRunclassifiedCurrent focus
9 564-10 568 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005845255#FGQ84_RS04640Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0513802
Simplified PFAM architecture for RROC_0513802
PFAM domain coverage: 181 / 334 aa (54.2%)
1 aa334 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-105] | HTH_18[252-329]
- Domain count: 2
- Matched identifier: RROC_0513802
- Positioned domains: Response_reg 3-105 ; Response_reg 3-105 ; HTH_18 252-329 ; HTH_18 252-329
Cluster members and taxonomy
Representative gene: GCF_005845255#FGQ84_RS04640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015669935
AssemblyASM1566993v1 · Scaffoldhaploid
Genome composition3 630 746 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 109 · HK 47 · RR 60CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key