1 Response_reg#1
8-119 aa · 112 aa · 22.4% of protein
Raw token
Response_reg:8:1.23e-27:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U94_RS12215
Response regulator RpfG family
Mediterraneibacter faecis · GCF_015669775
ClassRRTypeRpfGLength499 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669775#I4U94_RS12215Stable P2CS identifier used across views.
GenomeGCF_015669775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage239 / 499 aa (47.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation2 items
2 HD#2
173-299 aa · 127 aa · 25.5% of protein
Raw token
HD:173:0.0000000000000901:299:127:110- Raw architecture: Response_reg:8:1.23e-27:119:113:111#HD:173:0.0000000000000901:299:127:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669775::NZ_JADPGZ010000013.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60776-64460Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669775::NZ_JADPGZ010000013.1::G00006Context members
I4U94_RS12210I4U94_RS12215
Partner locus tags
I4U94_RS12210I4U94_RS12215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195937479.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U94_RS12215Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGZ010000013.1Sequence record reported by the local genomic context database.
Genomic interval62 961-64 460 nt1 500 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 776-64 460 ntGCF_015669775::NZ_JADPGZ010000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669775::NZ_JADPGZ010000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGZ010000013.1All displayed genes belong to this local TCS context.
Neighborhood span60 776-64 460 nt3 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 776 nt64 460 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U94_RS12210GCF_015669775#I4U94_RS12210
HKHybrid
60 776-62 968 nt · Forward (+)
I4U94_RS12215GCF_015669775#I4U94_RS12215
RRRpfGCurrent focus
62 961-64 460 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015669775#I4U94_RS12215The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0159421
Simplified PFAM architecture for RROC_0159421
PFAM domain coverage: 255 / 499 aa (51.1%)
1 aa499 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[8-117] | HD_5[178-322]
- Domain count: 2
- Matched identifier: RROC_0159421
- Positioned domains: Response_reg 8-117 ; HD_5 178-322
Cluster members and taxonomy
Representative gene: GCF_015669775#I4U94_RS12215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 592 978 · GCF_015669775
AssemblyASM1566977v1 · Scaffoldhaploid
Genome composition3 045 443 bp · 41,0% GCMediterraneibacter faecis
Signal transduction countsGenes 72 · HK 35 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key