1 Response_reg#1
6-121 aa · 116 aa · 44.4% of protein
Raw token
Response_reg:6:2.16e-23:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U94_RS02405
Response regulator Spo0A family
Mediterraneibacter faecis · GCF_015669775
ClassRRTypeSpo0ALength261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015669775#I4U94_RS02405Stable P2CS identifier used across views.
GenomeGCF_015669775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 261 aa (84.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
150-253 aa · 104 aa · 39.8% of protein
Raw token
Spo0A_C:150:1.02e-66:253:104:104- Raw architecture: Response_reg:6:2.16e-23:121:116:111#Spo0A_C:150:1.02e-66:253:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015669775::NZ_JADPGZ010000001.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span507652-508437Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669775::NZ_JADPGZ010000001.1::G00015Context members
I4U94_RS02405
Partner locus tags
I4U94_RS02405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020436272.1Primary protein accession used for annex mappings.
UniProt accessionA0A174WK58Primary UniProt accession resolved in the annex database.
UniProt IDA0A174WK58_9FIRMDisplay identifier provided by UniProt.
GO / PubMed9 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U94_RS02405Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval507 652-508 437 nt786 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span507 652-508 437 ntGCF_015669775::NZ_JADPGZ010000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669775::NZ_JADPGZ010000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span507 652-508 437 nt786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
507 652 nt508 437 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4U94_RS02405GCF_015669775#I4U94_RS02405
RRSpo0ACurrent focus
507 652-508 437 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405235#ARA40_RS03270Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0648943
Simplified PFAM architecture for RROC_0648943
PFAM domain coverage: 220 / 261 aa (84.3%)
1 aa261 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-121] | Spo0A_C[150-253]
- Domain count: 2
- Matched identifier: RROC_0648943
- Positioned domains: Response_reg 6-121 ; Response_reg 6-121 ; Spo0A_C 150-253 ; Spo0A_C 150-253
Cluster members and taxonomy
Representative gene: GCF_001405235#ARA40_RS03270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 592 978 · GCF_015669775
AssemblyASM1566977v1 · Scaffoldhaploid
Genome composition3 045 443 bp · 41,0% GCMediterraneibacter faecis
Signal transduction countsGenes 72 · HK 35 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key