1 HisKA#1
345-411 aa · 67 aa · 9.2% of protein
Raw token
HisKA:345:0.0000000000000177:411:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U94_RS12210
Histidine kinase, Hybrid
Mediterraneibacter faecis · GCF_015669775
ClassHKTypeHybridLength730 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669775#I4U94_RS12210Stable P2CS identifier used across views.
GenomeGCF_015669775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length730 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 730 aa (41.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa730 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
458-576 aa · 119 aa · 16.3% of protein
Raw token
HATPase_c:458:6.37e-28:576:119:1093 Response_reg#3
599-716 aa · 118 aa · 16.2% of protein
Raw token
Response_reg:599:3.91e-28:716:118:111- Raw architecture: HisKA:345:0.0000000000000177:411:67:64#HATPase_c:458:6.37e-28:576:119:109#Response_reg:599:3.91e-28:716:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669775::NZ_JADPGZ010000013.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60776-64460Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669775::NZ_JADPGZ010000013.1::G00006Context members
I4U94_RS12210I4U94_RS12215
Partner locus tags
I4U94_RS12210I4U94_RS12215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243283453.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U94_RS12210Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGZ010000013.1Sequence record reported by the local genomic context database.
Genomic interval60 776-62 968 nt2 193 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 776-64 460 ntGCF_015669775::NZ_JADPGZ010000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669775::NZ_JADPGZ010000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGZ010000013.1All displayed genes belong to this local TCS context.
Neighborhood span60 776-64 460 nt3 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 776 nt64 460 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U94_RS12210GCF_015669775#I4U94_RS12210
HKHybridCurrent focus
60 776-62 968 nt · Forward (+)
I4U94_RS12215GCF_015669775#I4U94_RS12215
RRRpfG
62 961-64 460 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015669775#I4U94_RS12210The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0712978
Simplified PFAM architecture for HKOC_0712978
PFAM domain coverage: 301 / 730 aa (41.2%)
1 aa730 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[345-411] | HATPase_c[459-575] | Response_reg[599-715]
- Domain count: 3
- Matched identifier: HKOC_0712978
- Positioned domains: HisKA 345-411 ; HATPase_c 459-575 ; Response_reg 599-715
Cluster members and taxonomy
Representative gene: GCF_015669775#I4U94_RS12210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 592 978 · GCF_015669775
AssemblyASM1566977v1 · Scaffoldhaploid
Genome composition3 045 443 bp · 41,0% GCMediterraneibacter faecis
Signal transduction countsGenes 72 · HK 35 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key