1 HisKA#1
35-90 aa · 56 aa · 22.7% of protein
Raw token
HisKA:35:0.00000365:90:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U94_RS12020
Histidine kinase, Classic
Mediterraneibacter faecis · GCF_015669775
ClassHKTypeClassicLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015669775#I4U94_RS12020Stable P2CS identifier used across views.
GenomeGCF_015669775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 247 aa (66.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
140-246 aa · 107 aa · 43.3% of protein
Raw token
HATPase_c:140:1.81e-30:246:110:109- Raw architecture: HisKA:35:0.00000365:90:56:64#HATPase_c:140:1.81e-30:246:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015669775::NZ_JADPGZ010000013.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span20657-21400Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669775::NZ_JADPGZ010000013.1::G00005Context members
I4U94_RS12020
Partner locus tags
I4U94_RS12020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015527655.1Primary protein accession used for annex mappings.
UniProt accessionD4M1A2Primary UniProt accession resolved in the annex database.
UniProt IDD4M1A2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U94_RS12020Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGZ010000013.1Sequence record reported by the local genomic context database.
Genomic interval20 657-21 400 nt744 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 657-21 400 ntGCF_015669775::NZ_JADPGZ010000013.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669775::NZ_JADPGZ010000013.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGZ010000013.1All displayed genes belong to this local TCS context.
Neighborhood span20 657-21 400 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 657 nt21 400 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4U94_RS12020GCF_015669775#I4U94_RS12020
HKClassicCurrent focus
20 657-21 400 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210035#RTO_RS01055Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2920166
Simplified PFAM architecture for HKOC_2920166
PFAM domain coverage: 107 / 247 aa (43.3%)
1 aa247 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[140-246]
- Domain count: 1
- Matched identifier: HKOC_2920166
- Positioned domains: HATPase_c 140-246
Cluster members and taxonomy
Representative gene: GCF_000210035#RTO_RS01055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 592 978 · GCF_015669775
AssemblyASM1566977v1 · Scaffoldhaploid
Genome composition3 045 443 bp · 41,0% GCMediterraneibacter faecis
Signal transduction countsGenes 72 · HK 35 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key