1 HAMP#1
278-347 aa · 70 aa · 12.0% of protein
Raw token
HAMP:278:4.31e-17:347:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U94_RS11460
Histidine kinase, Classic
Mediterraneibacter faecis · GCF_015669775
ClassHKTypeClassicLength581 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669775#I4U94_RS11460Stable P2CS identifier used across views.
GenomeGCF_015669775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length581 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 581 aa (44.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa581 aa
Domain-by-domain annotation3 items
2 His_kinase#2
362-441 aa · 80 aa · 13.8% of protein
Raw token
His_kinase:362:1.5e-32:441:80:803 HATPase_c#3
458-565 aa · 108 aa · 18.6% of protein
Raw token
HATPase_c:458:1.88e-16:565:111:109- Raw architecture: HAMP:278:4.31e-17:347:70:69#His_kinase:362:1.5e-32:441:80:80#HATPase_c:458:1.88e-16:565:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669775::NZ_JADPGZ010000011.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83075-85517Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669775::NZ_JADPGZ010000011.1::G00003Context members
I4U94_RS11455I4U94_RS11460
Partner locus tags
I4U94_RS11455I4U94_RS11460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_081021275.1Primary protein accession used for annex mappings.
UniProt accessionA0A174Z3G7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174Z3G7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U94_RS11460Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGZ010000011.1Sequence record reported by the local genomic context database.
Genomic interval83 772-85 517 nt1 746 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 075-85 517 ntGCF_015669775::NZ_JADPGZ010000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669775::NZ_JADPGZ010000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGZ010000011.1All displayed genes belong to this local TCS context.
Neighborhood span83 075-85 517 nt2 443 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 075 nt85 517 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U94_RS11455GCF_015669775#I4U94_RS11455
RRunclassified
83 075-83 794 nt · Reverse (-)
I4U94_RS11460GCF_015669775#I4U94_RS11460
HKClassicCurrent focus
83 772-85 517 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406755#ARA59_RS01860Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1157130
Simplified PFAM architecture for HKOC_1157130
PFAM domain coverage: 237 / 581 aa (40.8%)
1 aa581 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[296-347] | His_kinase[362-441] | HATPase_c[460-564]
- Domain count: 3
- Matched identifier: HKOC_1157130
- Positioned domains: HAMP 296-347 ; His_kinase 362-441 ; HATPase_c 460-564
Cluster members and taxonomy
Representative gene: GCF_001406755#ARA59_RS01860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 592 978 · GCF_015669775
AssemblyASM1566977v1 · Scaffoldhaploid
Genome composition3 045 443 bp · 41,0% GCMediterraneibacter faecis
Signal transduction countsGenes 72 · HK 35 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key