1 HisKA#1
485-547 aa · 63 aa · 8.8% of protein
Raw token
HisKA:485:7.94e-17:547:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U94_RS08665
Histidine kinase, Classic
Mediterraneibacter faecis · GCF_015669775
ClassHKTypeClassicLength712 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669775#I4U94_RS08665Stable P2CS identifier used across views.
GenomeGCF_015669775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length712 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 712 aa (22.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa712 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
597-691 aa · 95 aa · 13.3% of protein
Raw token
HATPase_c:597:0.00000000027:691:99:109- Raw architecture: HisKA:485:7.94e-17:547:63:64#HATPase_c:597:0.00000000027:691:99:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669775::NZ_JADPGZ010000006.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61411-64219Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669775::NZ_JADPGZ010000006.1::G00035Context members
I4U94_RS08665I4U94_RS08670
Partner locus tags
I4U94_RS08665I4U94_RS08670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055173037.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ZZC0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ZZC0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U94_RS08665Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGZ010000006.1Sequence record reported by the local genomic context database.
Genomic interval61 411-63 549 nt2 139 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 411-64 219 ntGCF_015669775::NZ_JADPGZ010000006.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669775::NZ_JADPGZ010000006.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGZ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span61 411-64 219 nt2 809 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 411 nt64 219 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U94_RS08665GCF_015669775#I4U94_RS08665
HKClassicCurrent focus
61 411-63 549 nt · Reverse (-)
I4U94_RS08670GCF_015669775#I4U94_RS08670
RROmpR
63 521-64 219 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406755#ARA59_RS11455Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0747537
Simplified PFAM architecture for HKOC_0747537
PFAM domain coverage: 158 / 712 aa (22.2%)
1 aa712 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[485-547] | HATPase_c[597-691]
- Domain count: 2
- Matched identifier: HKOC_0747537
- Positioned domains: HisKA 485-547 ; HATPase_c 597-691
Cluster members and taxonomy
Representative gene: GCF_001406755#ARA59_RS11455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 592 978 · GCF_015669775
AssemblyASM1566977v1 · Scaffoldhaploid
Genome composition3 045 443 bp · 41,0% GCMediterraneibacter faecis
Signal transduction countsGenes 72 · HK 35 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key