1 HAMP#1
92-161 aa · 70 aa · 17.8% of protein
Raw token
HAMP:92:0.0000000119:161:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U94_RS04870
Histidine kinase, Classic
Mediterraneibacter faecis · GCF_015669775
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669775#I4U94_RS04870Stable P2CS identifier used across views.
GenomeGCF_015669775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 393 aa (60.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation3 items
2 HisKA#2
178-241 aa · 64 aa · 16.3% of protein
Raw token
HisKA:178:0.000000961:241:64:643 HATPase_c#3
286-389 aa · 104 aa · 26.5% of protein
Raw token
HATPase_c:286:1.44e-18:389:107:109- Raw architecture: HAMP:92:0.0000000119:161:70:69#HisKA:178:0.000000961:241:64:64#HATPase_c:286:1.44e-18:389:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669775::NZ_JADPGZ010000002.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span276585-278428Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669775::NZ_JADPGZ010000002.1::G00030Context members
I4U94_RS04865I4U94_RS04870
Partner locus tags
I4U94_RS04865I4U94_RS04870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025580964.1Primary protein accession used for annex mappings.
UniProt accessionA0A415CXQ0Primary UniProt accession resolved in the annex database.
UniProt IDA0A415CXQ0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U94_RS04870Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGZ010000002.1Sequence record reported by the local genomic context database.
Genomic interval277 247-278 428 nt1 182 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span276 585-278 428 ntGCF_015669775::NZ_JADPGZ010000002.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669775::NZ_JADPGZ010000002.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGZ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span276 585-278 428 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
276 585 nt278 428 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U94_RS04865GCF_015669775#I4U94_RS04865
RROmpR
276 585-277 259 nt · Forward (+)
I4U94_RS04870GCF_015669775#I4U94_RS04870
HKClassicCurrent focus
277 247-278 428 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210655#RO1_RS13510Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2503354
Simplified PFAM architecture for HKOC_2503354
PFAM domain coverage: 211 / 393 aa (53.7%)
1 aa393 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[117-160] | HisKA[178-241] | HATPase_c[287-389]
- Domain count: 3
- Matched identifier: HKOC_2503354
- Positioned domains: HAMP 117-160 ; HisKA 178-241 ; HATPase_c 287-389
Cluster members and taxonomy
Representative gene: GCF_000210655#RO1_RS13510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 592 978 · GCF_015669775
AssemblyASM1566977v1 · Scaffoldhaploid
Genome composition3 045 443 bp · 41,0% GCMediterraneibacter faecis
Signal transduction countsGenes 72 · HK 35 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key