1 HAMP#1
85-155 aa · 71 aa · 17.4% of protein
Raw token
HAMP:85:0.000000000212:155:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U94_RS04760
Histidine kinase, Classic
Mediterraneibacter faecis · GCF_015669775
ClassHKTypeClassicLength407 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669775#I4U94_RS04760Stable P2CS identifier used across views.
GenomeGCF_015669775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length407 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 407 aa (61.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa407 aa
Domain-by-domain annotation3 items
2 HisKA#2
160-226 aa · 67 aa · 16.5% of protein
Raw token
HisKA:160:0.000000000021:226:67:643 HATPase_c#3
296-407 aa · 112 aa · 27.5% of protein
Raw token
HATPase_c:296:3.05e-31:407:112:109- Raw architecture: HAMP:85:0.000000000212:155:71:69#HisKA:160:0.000000000021:226:67:64#HATPase_c:296:3.05e-31:407:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669775::NZ_JADPGZ010000002.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span256441-258398Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669775::NZ_JADPGZ010000002.1::G00029Context members
I4U94_RS04760I4U94_RS04765
Partner locus tags
I4U94_RS04760I4U94_RS04765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195937122.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U94_RS04760Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGZ010000002.1Sequence record reported by the local genomic context database.
Genomic interval256 441-257 664 nt1 224 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span256 441-258 398 ntGCF_015669775::NZ_JADPGZ010000002.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669775::NZ_JADPGZ010000002.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGZ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span256 441-258 398 nt1 958 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
256 441 nt258 398 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U94_RS04760GCF_015669775#I4U94_RS04760
HKClassicCurrent focus
256 441-257 664 nt · Reverse (-)
I4U94_RS04765GCF_015669775#I4U94_RS04765
RROmpR
257 661-258 398 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015669775#I4U94_RS04760The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2382583
Simplified PFAM architecture for HKOC_2382583
PFAM domain coverage: 174 / 407 aa (42.8%)
1 aa407 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[160-225] | HATPase_c[299-406]
- Domain count: 2
- Matched identifier: HKOC_2382583
- Positioned domains: HisKA 160-225 ; HATPase_c 299-406
Cluster members and taxonomy
Representative gene: GCF_015669775#I4U94_RS04760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 592 978 · GCF_015669775
AssemblyASM1566977v1 · Scaffoldhaploid
Genome composition3 045 443 bp · 41,0% GCMediterraneibacter faecis
Signal transduction countsGenes 72 · HK 35 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key