1 HisKA#1
197-260 aa · 64 aa · 15.2% of protein
Raw token
HisKA:197:0.0000000497:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4U94_RS04280
Histidine kinase, Classic
Mediterraneibacter faecis · GCF_015669775
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015669775#I4U94_RS04280Stable P2CS identifier used across views.
GenomeGCF_015669775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 421 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-418 aa · 110 aa · 26.1% of protein
Raw token
HATPase_c:309:1.48e-28:418:110:109- Raw architecture: HisKA:197:0.0000000497:260:64:64#HATPase_c:309:1.48e-28:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015669775::NZ_JADPGZ010000002.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span161300-163230Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015669775::NZ_JADPGZ010000002.1::G00027Context members
I4U94_RS04280I4U94_RS04285
Partner locus tags
I4U94_RS04280I4U94_RS04285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195937099.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4U94_RS04280Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPGZ010000002.1Sequence record reported by the local genomic context database.
Genomic interval161 300-162 565 nt1 266 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span161 300-163 230 ntGCF_015669775::NZ_JADPGZ010000002.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015669775::NZ_JADPGZ010000002.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPGZ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span161 300-163 230 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
161 300 nt163 230 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4U94_RS04280GCF_015669775#I4U94_RS04280
HKClassicCurrent focus
161 300-162 565 nt · Reverse (-)
I4U94_RS04285GCF_015669775#I4U94_RS04285
RROmpR
162 541-163 230 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015669775#I4U94_RS04280The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2260206
Simplified PFAM architecture for HKOC_2260206
PFAM domain coverage: 175 / 421 aa (41.6%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[197-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2260206
- Positioned domains: HisKA 197-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_015669775#I4U94_RS04280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 592 978 · GCF_015669775
AssemblyASM1566977v1 · Scaffoldhaploid
Genome composition3 045 443 bp · 41,0% GCMediterraneibacter faecis
Signal transduction countsGenes 72 · HK 35 · RR 36CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key