1 SBP_bac_3#1
43-259 aa · 217 aa · 22.7% of protein
Raw token
SBP_bac_3:43:2.89e-26:259:229:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS16145
Histidine kinase, Hybrid
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassHKTypeHybridLength957 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015668065#I4V84_RS16145Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length957 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage720 / 957 aa (75.2%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa957 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
281-482 aa · 202 aa · 21.1% of protein
Raw token
SBP_bac_3:281:6.8e-18:482:221:2243 HisKA#3
577-642 aa · 66 aa · 6.9% of protein
Raw token
HisKA:577:4.65e-17:642:66:644 HATPase_c#4
691-808 aa · 118 aa · 12.3% of protein
Raw token
HATPase_c:691:2.21e-26:808:119:1095 Response_reg#5
829-945 aa · 117 aa · 12.2% of protein
Raw token
Response_reg:829:1.42e-29:945:117:111- Raw architecture: SBP_bac_3:43:2.89e-26:259:229:224#SBP_bac_3:281:6.8e-18:482:221:224#HisKA:577:4.65e-17:642:66:64#HATPase_c:691:2.21e-26:808:119:109#Response_reg:829:1.42e-29:945:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015668065::NZ_JADPEX010000030.1::G00040
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18622-21495Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000030.1::G00040Context members
I4V84_RS16145
Partner locus tags
I4V84_RS16145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195992929.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS16145Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000030.1Sequence record reported by the local genomic context database.
Genomic interval18 622-21 495 nt2 874 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 622-21 495 ntGCF_015668065::NZ_JADPEX010000030.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000030.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000030.1All displayed genes belong to this local TCS context.
Neighborhood span18 622-21 495 nt2 874 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 622 nt21 495 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4V84_RS16145GCF_015668065#I4V84_RS16145
HKHybridCurrent focus
18 622-21 495 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS16145The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0320401
Simplified PFAM architecture for HKOC_0320401
PFAM domain coverage: 498 / 957 aa (52.0%)
1 aa957 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[51-249] | HisKA[577-642] | HATPase_c[692-807] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0320401
- Positioned domains: SBP_bac_3 51-249 ; HisKA 577-642 ; HATPase_c 692-807 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS16145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key