1 SBP_bac_3#1
44-260 aa · 217 aa · 22.7% of protein
Raw token
SBP_bac_3:44:9.18e-32:260:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS00300
Histidine kinase, Hybrid
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassHKTypeHybridLength955 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015668065#I4V84_RS00300Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length955 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage727 / 955 aa (76.1%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa955 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
282-486 aa · 205 aa · 21.5% of protein
Raw token
SBP_bac_3:282:0.00000000021:486:226:2243 HisKA#3
571-639 aa · 69 aa · 7.2% of protein
Raw token
HisKA:571:5.19e-19:639:69:644 HATPase_c#4
685-803 aa · 119 aa · 12.5% of protein
Raw token
HATPase_c:685:1.46e-29:803:119:1095 Response_reg#5
829-945 aa · 117 aa · 12.3% of protein
Raw token
Response_reg:829:4.66e-29:945:117:111- Raw architecture: SBP_bac_3:44:9.18e-32:260:227:224#SBP_bac_3:282:0.00000000021:486:226:224#HisKA:571:5.19e-19:639:69:64#HATPase_c:685:1.46e-29:803:119:109#Response_reg:829:4.66e-29:945:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015668065::NZ_JADPEX010000001.1::G00020
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span57321-63567Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000001.1::G00020Context members
I4V84_RS00300I4V84_RS00305
Partner locus tags
I4V84_RS00300I4V84_RS00305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195991011.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS00300Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000001.1Sequence record reported by the local genomic context database.
Genomic interval57 321-60 188 nt2 868 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span57 321-63 567 ntGCF_015668065::NZ_JADPEX010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000001.1All displayed genes belong to this local TCS context.
Neighborhood span57 321-63 567 nt6 247 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
57 321 nt63 567 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V84_RS00300GCF_015668065#I4V84_RS00300
HKHybridCurrent focus
57 321-60 188 nt · Reverse (-)
I4V84_RS00305GCF_015668065#I4V84_RS00305
HKHybrid
60 616-63 567 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS00300The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0322308
Simplified PFAM architecture for HKOC_0322308
PFAM domain coverage: 519 / 955 aa (54.3%)
1 aa955 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[45-261] | HisKA[571-639] | HATPase_c[686-801] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0322308
- Positioned domains: SBP_bac_3 45-261 ; HisKA 571-639 ; HATPase_c 686-801 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS00300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key