1 Response_reg#1
4-116 aa · 113 aa · 21.7% of protein
Raw token
Response_reg:4:2.19e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS14205
Response regulator, unclassified
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassRRTypeunclassifiedLength520 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015668065#I4V84_RS14205Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length520 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 520 aa (28.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa520 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
477-513 aa · 37 aa · 7.1% of protein
Raw token
HTH_AraC:477:0.000000225:513:37:42- Raw architecture: Response_reg:4:2.19e-29:116:113:111#HTH_AraC:477:0.000000225:513:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015668065::NZ_JADPEX010000024.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11065-14281Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000024.1::G00033Context members
I4V84_RS14205I4V84_RS14210
Partner locus tags
I4V84_RS14205I4V84_RS14210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195992652.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS14205Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000024.1Sequence record reported by the local genomic context database.
Genomic interval11 065-12 627 nt1 563 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 065-14 281 ntGCF_015668065::NZ_JADPEX010000024.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000024.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000024.1All displayed genes belong to this local TCS context.
Neighborhood span11 065-14 281 nt3 217 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 065 nt14 281 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V84_RS14205GCF_015668065#I4V84_RS14205
RRunclassifiedCurrent focus
11 065-12 627 nt · Forward (+)
I4V84_RS14210GCF_015668065#I4V84_RS14210
HKClassic
12 659-14 281 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS14205The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0126499
Simplified PFAM architecture for RROC_0126499
PFAM domain coverage: 190 / 520 aa (36.5%)
1 aa520 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[436-515]
- Domain count: 2
- Matched identifier: RROC_0126499
- Positioned domains: Response_reg 4-113 ; HTH_18 436-515
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS14205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key