1 dCache_1#1
62-285 aa · 224 aa · 36.1% of protein
Raw token
dCache_1:62:0.0000881:285:228:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS13365
Histidine kinase, Classic
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassHKTypeClassicLength621 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015668065#I4V84_RS13365Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length621 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage472 / 621 aa (76.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa621 aa
Domain-by-domain annotation4 items
2 HAMP#2
303-369 aa · 67 aa · 10.8% of protein
Raw token
HAMP:303:0.0000000000254:369:67:693 His_kinase#3
385-463 aa · 79 aa · 12.7% of protein
Raw token
His_kinase:385:1.26e-27:463:79:804 HATPase_c#4
481-582 aa · 102 aa · 16.4% of protein
Raw token
HATPase_c:481:0.000000000000502:582:111:109- Raw architecture: dCache_1:62:0.0000881:285:228:195#HAMP:303:0.0000000000254:369:67:69#His_kinase:385:1.26e-27:463:79:80#HATPase_c:481:0.000000000000502:582:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015668065::NZ_JADPEX010000022.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12408-15801Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000022.1::G00032Context members
I4V84_RS13365I4V84_RS13370
Partner locus tags
I4V84_RS13365I4V84_RS13370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243284103.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS13365Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000022.1Sequence record reported by the local genomic context database.
Genomic interval12 408-14 273 nt1 866 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 408-15 801 ntGCF_015668065::NZ_JADPEX010000022.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000022.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000022.1All displayed genes belong to this local TCS context.
Neighborhood span12 408-15 801 nt3 394 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 408 nt15 801 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V84_RS13365GCF_015668065#I4V84_RS13365
HKClassicCurrent focus
12 408-14 273 nt · Reverse (-)
I4V84_RS13370GCF_015668065#I4V84_RS13370
RRunclassified
14 200-15 801 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS13365The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0971176
Simplified PFAM architecture for HKOC_0971176
PFAM domain coverage: 226 / 621 aa (36.4%)
1 aa621 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[318-368] | His_kinase[385-460] | HATPase_c[483-581]
- Domain count: 3
- Matched identifier: HKOC_0971176
- Positioned domains: HAMP 318-368 ; His_kinase 385-460 ; HATPase_c 483-581
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS13365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key