1 HAMP#1
69-136 aa · 68 aa · 18.3% of protein
Raw token
HAMP:69:0.0000000744:136:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS13325
Histidine kinase, Classic
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassHKTypeClassicLength372 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015668065#I4V84_RS13325Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 372 aa (63.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation3 items
2 HisKA#2
156-220 aa · 65 aa · 17.5% of protein
Raw token
HisKA:156:0.0000000412:220:65:643 HATPase_c#3
269-372 aa · 104 aa · 28.0% of protein
Raw token
HATPase_c:269:8.63e-17:372:108:109- Raw architecture: HAMP:69:0.0000000744:136:68:69#HisKA:156:0.0000000412:220:65:64#HATPase_c:269:8.63e-17:372:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015668065::NZ_JADPEX010000022.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3234-5019Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000022.1::G00031Context members
I4V84_RS13320I4V84_RS13325
Partner locus tags
I4V84_RS13320I4V84_RS13325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195992492.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS13325Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000022.1Sequence record reported by the local genomic context database.
Genomic interval3 901-5 019 nt1 119 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 234-5 019 ntGCF_015668065::NZ_JADPEX010000022.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000022.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000022.1All displayed genes belong to this local TCS context.
Neighborhood span3 234-5 019 nt1 786 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 234 nt5 019 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V84_RS13320GCF_015668065#I4V84_RS13320
RROmpR
3 234-3 923 nt · Forward (+)
I4V84_RS13325GCF_015668065#I4V84_RS13325
HKClassicCurrent focus
3 901-5 019 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS13325The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2672546
Simplified PFAM architecture for HKOC_2672546
PFAM domain coverage: 217 / 372 aa (58.3%)
1 aa372 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[87-136] | HisKA[157-220] | HATPase_c[269-371]
- Domain count: 3
- Matched identifier: HKOC_2672546
- Positioned domains: HAMP 87-136 ; HisKA 157-220 ; HATPase_c 269-371
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS13325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key