1 Response_reg#1
10-116 aa · 107 aa · 13.2% of protein
Raw token
Response_reg:10:5.41e-26:116:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS13240
Response regulator, RpfG family
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassRRTypeRpfGLength808 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015668065#I4V84_RS13240Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHDGGDEF
Protein length808 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage348 / 808 aa (43.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HD,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa808 aa
Domain-by-domain annotation3 items
2 HD#2
171-305 aa · 135 aa · 16.7% of protein
Raw token
HD:171:0.0000000000000215:305:135:1103 GGDEF#3
674-779 aa · 106 aa · 13.1% of protein
Raw token
GGDEF:674:1.93e-25:779:114:160- Raw architecture: Response_reg:10:5.41e-26:116:108:111#HD:171:0.0000000000000215:305:135:110#GGDEF:674:1.93e-25:779:114:160
- Domain description: 1 Response_reg,1 HD,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015668065::NZ_JADPEX010000021.1::G00030
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span79459-81885Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000021.1::G00030Context members
I4V84_RS13240
Partner locus tags
I4V84_RS13240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195992466.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS13240Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000021.1Sequence record reported by the local genomic context database.
Genomic interval79 459-81 885 nt2 427 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 459-81 885 ntGCF_015668065::NZ_JADPEX010000021.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000021.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000021.1All displayed genes belong to this local TCS context.
Neighborhood span79 459-81 885 nt2 427 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 459 nt81 885 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4V84_RS13240GCF_015668065#I4V84_RS13240
RRRpfGCurrent focus
79 459-81 885 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS13240The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_5 + GGDEF3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0015597
Simplified PFAM architecture for RROC_0015597
PFAM domain coverage: 370 / 808 aa (45.8%)
1 aa808 aa
Response_regHD_5GGDEF
- Simplified architecture: Response_reg + HD_5 + GGDEF
- Raw architecture: Response_reg[10-118] | HD_5[170-325] | GGDEF[675-779]
- Domain count: 3
- Matched identifier: RROC_0015597
- Positioned domains: Response_reg 10-118 ; HD_5 170-325 ; GGDEF 675-779
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS13240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key