1 HAMP#1
176-244 aa · 69 aa · 14.5% of protein
Raw token
HAMP:176:0.0000000391:244:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS11320
Histidine kinase, Classic
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015668065#I4V84_RS11320Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 475 aa (51.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa475 aa
Domain-by-domain annotation3 items
2 HisKA#2
249-314 aa · 66 aa · 13.9% of protein
Raw token
HisKA:249:0.00000000000548:314:66:643 HATPase_c#3
362-471 aa · 110 aa · 23.2% of protein
Raw token
HATPase_c:362:1.24e-30:471:110:109- Raw architecture: HAMP:176:0.0000000391:244:69:69#HisKA:249:0.00000000000548:314:66:64#HATPase_c:362:1.24e-30:471:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015668065::NZ_JADPEX010000017.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41394-43514Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000017.1::G00018Context members
I4V84_RS11315I4V84_RS11320
Partner locus tags
I4V84_RS11315I4V84_RS11320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195992018.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS11320Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000017.1Sequence record reported by the local genomic context database.
Genomic interval42 087-43 514 nt1 428 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 394-43 514 ntGCF_015668065::NZ_JADPEX010000017.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000017.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000017.1All displayed genes belong to this local TCS context.
Neighborhood span41 394-43 514 nt2 121 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 394 nt43 514 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V84_RS11315GCF_015668065#I4V84_RS11315
RROmpR
41 394-42 083 nt · Forward (+)
I4V84_RS11320GCF_015668065#I4V84_RS11320
HKClassicCurrent focus
42 087-43 514 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS11320The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1668347
Simplified PFAM architecture for HKOC_1668347
PFAM domain coverage: 176 / 475 aa (37.1%)
1 aa475 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[249-314] | HATPase_c[362-471]
- Domain count: 2
- Matched identifier: HKOC_1668347
- Positioned domains: HisKA 249-314 ; HATPase_c 362-471
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS11320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key