1 HAMP#1
88-156 aa · 69 aa · 17.0% of protein
Raw token
HAMP:88:0.0000000000000392:156:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS11020
Histidine kinase, Classic
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015668065#I4V84_RS11020Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 405 aa (60.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa405 aa
Domain-by-domain annotation3 items
2 HisKA#2
163-228 aa · 66 aa · 16.3% of protein
Raw token
HisKA:163:0.000000000000141:228:66:643 HATPase_c#3
290-400 aa · 111 aa · 27.4% of protein
Raw token
HATPase_c:290:9.58e-31:400:111:109- Raw architecture: HAMP:88:0.0000000000000392:156:69:69#HisKA:163:0.000000000000141:228:66:64#HATPase_c:290:9.58e-31:400:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015668065::NZ_JADPEX010000016.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span86397-88285Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000016.1::G00015Context members
I4V84_RS11020I4V84_RS11025
Partner locus tags
I4V84_RS11020I4V84_RS11025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243284074.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS11020Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000016.1Sequence record reported by the local genomic context database.
Genomic interval86 397-87 614 nt1 218 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span86 397-88 285 ntGCF_015668065::NZ_JADPEX010000016.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000016.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000016.1All displayed genes belong to this local TCS context.
Neighborhood span86 397-88 285 nt1 889 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 397 nt88 285 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V84_RS11020GCF_015668065#I4V84_RS11020
HKClassicCurrent focus
86 397-87 614 nt · Reverse (-)
I4V84_RS11025GCF_015668065#I4V84_RS11025
RROmpR
87 611-88 285 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS11020The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2400770
Simplified PFAM architecture for HKOC_2400770
PFAM domain coverage: 224 / 405 aa (55.3%)
1 aa405 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[105-156] | HisKA[163-226] | HATPase_c[293-400]
- Domain count: 3
- Matched identifier: HKOC_2400770
- Positioned domains: HAMP 105-156 ; HisKA 163-226 ; HATPase_c 293-400
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS11020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key