1 Response_reg#1
24-137 aa · 114 aa · 43.3% of protein
Raw token
Response_reg:24:0.0000000000000579:137:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS10860
Response regulator LytTR family
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassRRTypeLytTRLength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015668065#I4V84_RS10860Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 263 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation2 items
2 LytTR#2
162-246 aa · 85 aa · 32.3% of protein
Raw token
LytTR:162:0.0000000000000034:246:90:98- Raw architecture: Response_reg:24:0.0000000000000579:137:117:111#LytTR:162:0.0000000000000034:246:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015668065::NZ_JADPEX010000016.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34129-34920Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000016.1::G00011Context members
I4V84_RS10860
Partner locus tags
I4V84_RS10860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207748655.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS10860Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000016.1Sequence record reported by the local genomic context database.
Genomic interval34 129-34 920 nt792 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 129-34 920 ntGCF_015668065::NZ_JADPEX010000016.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000016.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000016.1All displayed genes belong to this local TCS context.
Neighborhood span34 129-34 920 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 129 nt34 920 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I4V84_RS10860GCF_015668065#I4V84_RS10860
RRLytTRCurrent focus
34 129-34 920 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS10860The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0641433
Simplified PFAM architecture for RROC_0641433
PFAM domain coverage: 193 / 263 aa (73.4%)
1 aa263 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[30-136] | LytTR[160-245]
- Domain count: 2
- Matched identifier: RROC_0641433
- Positioned domains: Response_reg 30-136 ; LytTR 160-245
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS10860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key