1 HAMP#1
189-258 aa · 70 aa · 14.0% of protein
Raw token
HAMP:189:0.0000000000000253:258:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS04460
Histidine kinase, Classic
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassHKTypeClassicLength500 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015668065#I4V84_RS04460Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length500 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 500 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa500 aa
Domain-by-domain annotation3 items
2 His_kinase#2
288-367 aa · 80 aa · 16.0% of protein
Raw token
His_kinase:288:6.11e-28:367:80:803 HATPase_c#3
386-494 aa · 109 aa · 21.8% of protein
Raw token
HATPase_c:386:0.0000000000000952:494:109:109- Raw architecture: HAMP:189:0.0000000000000253:258:70:69#His_kinase:288:6.11e-28:367:80:80#HATPase_c:386:0.0000000000000952:494:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015668065::NZ_JADPEX010000004.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span95398-98565Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000004.1::G00063Context members
I4V84_RS04455I4V84_RS04460
Partner locus tags
I4V84_RS04455I4V84_RS04460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195991336.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS04460Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000004.1Sequence record reported by the local genomic context database.
Genomic interval97 063-98 565 nt1 503 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span95 398-98 565 ntGCF_015668065::NZ_JADPEX010000004.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000004.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000004.1All displayed genes belong to this local TCS context.
Neighborhood span95 398-98 565 nt3 168 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 398 nt98 565 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V84_RS04455GCF_015668065#I4V84_RS04455
RRunclassified
95 398-96 993 nt · Reverse (-)
I4V84_RS04460GCF_015668065#I4V84_RS04460
HKClassicCurrent focus
97 063-98 565 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS04460The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1477534
Simplified PFAM architecture for HKOC_1477534
PFAM domain coverage: 238 / 500 aa (47.6%)
1 aa500 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[207-258] | His_kinase[288-364] | HATPase_c[385-493]
- Domain count: 3
- Matched identifier: HKOC_1477534
- Positioned domains: HAMP 207-258 ; His_kinase 288-364 ; HATPase_c 385-493
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS04460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key