1 Response_reg#1
4-117 aa · 114 aa · 45.4% of protein
Raw token
Response_reg:4:7.57e-26:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS04160
Response regulator, unclassified
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassRRTypeunclassifiedLength251 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015668065#I4V84_RS04160Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length251 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 251 aa (71.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa251 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
152-186 aa · 35 aa · 13.9% of protein
Raw token
HTH_AraC:152:0.0000000295:186:35:423 HTH_AraC#3
213-243 aa · 31 aa · 12.4% of protein
Raw token
HTH_AraC:213:0.000000579:243:31:42- Raw architecture: Response_reg:4:7.57e-26:117:114:111#HTH_AraC:152:0.0000000295:186:35:42#HTH_AraC:213:0.000000579:243:31:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015668065::NZ_JADPEX010000004.1::G00061
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36608-39080Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000004.1::G00061Context members
I4V84_RS04160I4V84_RS04165
Partner locus tags
I4V84_RS04160I4V84_RS04165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173716899.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS04160Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000004.1Sequence record reported by the local genomic context database.
Genomic interval36 608-37 363 nt756 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 608-39 080 ntGCF_015668065::NZ_JADPEX010000004.1::G00061
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000004.1::G00061Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000004.1All displayed genes belong to this local TCS context.
Neighborhood span36 608-39 080 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 608 nt39 080 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V84_RS04160GCF_015668065#I4V84_RS04160
RRunclassifiedCurrent focus
36 608-37 363 nt · Reverse (-)
I4V84_RS04165GCF_015668065#I4V84_RS04165
HKClassic
37 341-39 080 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS12570Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0715212
Simplified PFAM architecture for RROC_0715212
PFAM domain coverage: 193 / 251 aa (76.9%)
1 aa251 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[165-244]
- Domain count: 2
- Matched identifier: RROC_0715212
- Positioned domains: Response_reg 4-116 ; HTH_18 165-244
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS12570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key