1 HAMP#1
300-372 aa · 73 aa · 12.0% of protein
Raw token
HAMP:300:0.000000000049:372:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V84_RS03850
Histidine kinase, Classic
Ruminococcus sp. 1001713B170207_170306_F1 · GCF_015668065
ClassHKTypeClassicLength609 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015668065#I4V84_RS03850Stable P2CS identifier used across views.
GenomeGCF_015668065Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length609 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 609 aa (35.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa609 aa
Domain-by-domain annotation3 items
2 His_kinase#2
387-466 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:387:4.1e-29:466:80:803 HATPase_c#3
473-536 aa · 64 aa · 10.5% of protein
Raw token
HATPase_c:473:0.000000404:536:64:109- Raw architecture: HAMP:300:0.000000000049:372:73:69#His_kinase:387:4.1e-29:466:80:80#HATPase_c:473:0.000000404:536:64:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015668065::NZ_JADPEX010000003.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span158518-161112Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015668065::NZ_JADPEX010000003.1::G00052Context members
I4V84_RS03845I4V84_RS03850
Partner locus tags
I4V84_RS03845I4V84_RS03850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_148461551.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V84_RS03850Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEX010000003.1Sequence record reported by the local genomic context database.
Genomic interval159 283-161 112 nt1 830 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span158 518-161 112 ntGCF_015668065::NZ_JADPEX010000003.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015668065::NZ_JADPEX010000003.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEX010000003.1All displayed genes belong to this local TCS context.
Neighborhood span158 518-161 112 nt2 595 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
158 518 nt161 112 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V84_RS03845GCF_015668065#I4V84_RS03845
RRunclassified
158 518-159 261 nt · Reverse (-)
I4V84_RS03850GCF_015668065#I4V84_RS03850
HKClassicCurrent focus
159 283-161 112 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015668065#I4V84_RS03850The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1010545
Simplified PFAM architecture for HKOC_1010545
PFAM domain coverage: 77 / 609 aa (12.6%)
1 aa609 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[389-465]
- Domain count: 1
- Matched identifier: HKOC_1010545
- Positioned domains: His_kinase 389-465
Cluster members and taxonomy
Representative gene: GCF_015668065#I4V84_RS03850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 787 106 · GCF_015668065
AssemblyASM1566806v1 · Scaffoldhaploid
Genome composition4 260 374 bp · 43,0% GCRuminococcus sp. 1001713B170207_170306_F1
Signal transduction countsGenes 123 · HK 63 · RR 58CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key