1 HAMP#1
310-388 aa · 79 aa · 12.8% of protein
Raw token
HAMP:310:0.000000169:388:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I4V49_RS15500
Histidine kinase, Classic
Blautia wexlerae · GCF_015667985
ClassHKTypeClassicLength617 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015667985#I4V49_RS15500Stable P2CS identifier used across views.
GenomeGCF_015667985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length617 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 617 aa (42.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa617 aa
Domain-by-domain annotation3 items
2 His_kinase#2
403-482 aa · 80 aa · 13.0% of protein
Raw token
His_kinase:403:1.11e-23:482:80:803 HATPase_c#3
502-603 aa · 102 aa · 16.5% of protein
Raw token
HATPase_c:502:0.00000000000319:603:104:109- Raw architecture: HAMP:310:0.000000169:388:79:69#His_kinase:403:1.11e-23:482:80:80#HATPase_c:502:0.00000000000319:603:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015667985::NZ_JADPEU010000156.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3435Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015667985::NZ_JADPEU010000156.1::G00022Context members
I4V49_RS15500I4V49_RS15505
Partner locus tags
I4V49_RS15500I4V49_RS15505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_207745561.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI4V49_RS15500Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADPEU010000156.1Sequence record reported by the local genomic context database.
Genomic interval1-1 856 nt1 856 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-3 435 ntGCF_015667985::NZ_JADPEU010000156.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015667985::NZ_JADPEU010000156.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADPEU010000156.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 435 nt3 435 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 435 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I4V49_RS15500GCF_015667985#I4V49_RS15500
HKClassicCurrent focus
1-1 856 nt · Forward (+)
I4V49_RS15505GCF_015667985#I4V49_RS15505
RRunclassified
1 831-3 435 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015667985#I4V49_RS15500The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0983335
Simplified PFAM architecture for HKOC_0983335
PFAM domain coverage: 181 / 617 aa (29.3%)
1 aa617 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[404-481] | HATPase_c[502-604]
- Domain count: 2
- Matched identifier: HKOC_0983335
- Positioned domains: His_kinase 404-481 ; HATPase_c 502-604
Cluster members and taxonomy
Representative gene: GCF_015667985#I4V49_RS15500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_015667985
AssemblyASM1566798v1 · Scaffoldhaploid
Genome composition3 836 430 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 108 · HK 50 · RR 53CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key