1 HisKA#1
107-171 aa · 65 aa · 19.7% of protein
Raw token
HisKA:107:0.0000000000124:171:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2V19_RS02800
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_015561395
ClassHKTypeClassicLength330 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015561395#I2V19_RS02800Stable P2CS identifier used across views.
GenomeGCF_015561395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length330 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 330 aa (53.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa330 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
215-324 aa · 110 aa · 33.3% of protein
Raw token
HATPase_c:215:4.47e-25:324:111:109- Raw architecture: HisKA:107:0.0000000000124:171:65:64#HATPase_c:215:4.47e-25:324:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015561395::NZ_JADMTQ010000009.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11739-13437Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015561395::NZ_JADMTQ010000009.1::G00049Context members
I2V19_RS02800I2V19_RS02805
Partner locus tags
I2V19_RS02800I2V19_RS02805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_322099974.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2V19_RS02800Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMTQ010000009.1Sequence record reported by the local genomic context database.
Genomic interval11 739-12 731 nt993 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 739-13 437 ntGCF_015561395::NZ_JADMTQ010000009.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015561395::NZ_JADMTQ010000009.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMTQ010000009.1All displayed genes belong to this local TCS context.
Neighborhood span11 739-13 437 nt1 699 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 739 nt13 437 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2V19_RS02800GCF_015561395#I2V19_RS02800
HKClassicCurrent focus
11 739-12 731 nt · Forward (+)
I2V19_RS02805GCF_015561395#I2V19_RS02805
RROmpR
12 724-13 437 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015561395#I2V19_RS02800The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2857226
Simplified PFAM architecture for HKOC_2857226
PFAM domain coverage: 258 / 330 aa (78.2%)
1 aa330 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[7-91] | HisKA[106-170] | HATPase_c[216-323]
- Domain count: 3
- Matched identifier: HKOC_2857226
- Positioned domains: DUF4118 7-91 ; HisKA 106-170 ; HATPase_c 216-323
Cluster members and taxonomy
Representative gene: GCF_015561395#I2V19_RS02800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015561395
AssemblyASM1556139v1 · Scaffoldhaploid
Genome composition3 527 020 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 89 · HK 41 · RR 46CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key