1 HAMP#1
175-244 aa · 70 aa · 14.6% of protein
Raw token
HAMP:175:0.00000000000000425:244:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2H44_RS04015
Histidine kinase, Classic
Thomasclavelia ramosa · GCF_015560315
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015560315#I2H44_RS04015Stable P2CS identifier used across views.
GenomeGCF_015560315Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 479 aa (48.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation3 items
2 HisKA#2
259-315 aa · 57 aa · 11.9% of protein
Raw token
HisKA:259:0.00000000121:315:57:643 HATPase_c#3
365-471 aa · 107 aa · 22.3% of protein
Raw token
HATPase_c:365:7.08e-25:471:107:109- Raw architecture: HAMP:175:0.00000000000000425:244:70:69#HisKA:259:0.00000000121:315:57:64#HATPase_c:365:7.08e-25:471:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015560315::NZ_JADMRP010000004.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3310-5405Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015560315::NZ_JADMRP010000004.1::G00021Context members
I2H44_RS04010I2H44_RS04015
Partner locus tags
I2H44_RS04010I2H44_RS04015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195613670.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2H44_RS04015Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMRP010000004.1Sequence record reported by the local genomic context database.
Genomic interval3 966-5 405 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 310-5 405 ntGCF_015560315::NZ_JADMRP010000004.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015560315::NZ_JADMRP010000004.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMRP010000004.1All displayed genes belong to this local TCS context.
Neighborhood span3 310-5 405 nt2 096 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 310 nt5 405 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2H44_RS04010GCF_015560315#I2H44_RS04010
RROmpR
3 310-3 966 nt · Forward (+)
I2H44_RS04015GCF_015560315#I2H44_RS04015
HKClassicCurrent focus
3 966-5 405 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015560315#I2H44_RS04015The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1631755
Simplified PFAM architecture for HKOC_1631755
PFAM domain coverage: 217 / 479 aa (45.3%)
1 aa479 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[193-243] | HisKA[257-315] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1631755
- Positioned domains: HAMP 193-243 ; HisKA 257-315 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_015560315#I2H44_RS04015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 547 · GCF_015560315
AssemblyASM1556031v1 · Scaffoldhaploid
Genome composition3 541 385 bp · 31,5% GCThomasclavelia ramosa
Signal transduction countsGenes 51 · HK 24 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key