1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:4.54e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2H29_RS00785
Response regulator OmpR family
Roseburia faecis · GCF_015559645
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015559645#I2H29_RS00785Stable P2CS identifier used across views.
GenomeGCF_015559645Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Roseburia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 231 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.8% of protein
Raw token
Trans_reg_C:154:6.6e-32:231:78:77- Raw architecture: Response_reg:5:4.54e-35:114:111:111#Trans_reg_C:154:6.6e-32:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015559645::NZ_JADMQJ010000001.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span149822-150517Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015559645::NZ_JADMQJ010000001.1::G00013Context members
I2H29_RS00785
Partner locus tags
I2H29_RS00785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195591958.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2H29_RS00785Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMQJ010000001.1Sequence record reported by the local genomic context database.
Genomic interval149 822-150 517 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span149 822-150 517 ntGCF_015559645::NZ_JADMQJ010000001.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015559645::NZ_JADMQJ010000001.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMQJ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span149 822-150 517 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
149 822 nt150 517 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2H29_RS00785GCF_015559645#I2H29_RS00785
RROmpRCurrent focus
149 822-150 517 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015559645#I2H29_RS00785The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1175296
Simplified PFAM architecture for RROC_1175296
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1175296
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_015559645#I2H29_RS00785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 301 302 · GCF_015559645
AssemblyASM1555964v1 · Scaffoldhaploid
Genome composition3 369 040 bp · 43,0% GCRoseburia faecis
Signal transduction countsGenes 101 · HK 42 · RR 58CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusRoseburia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Roseburia
Related genes
Preview from the same derived genome key