1 Response_reg#1
43-122 aa · 80 aa · 32.5% of protein
Raw token
Response_reg:43:0.000000000926:122:80:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G74_RS11020
Response regulator NarL family
Bifidobacterium longum · GCF_015558965
ClassRRTypeNarLLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015558965#I2G74_RS11020Stable P2CS identifier used across views.
GenomeGCF_015558965Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage133 / 246 aa (54.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
174-226 aa · 53 aa · 21.5% of protein
Raw token
HTH_LUXR:174:0.0000000000000872:226:53:58- Raw architecture: Response_reg:43:0.000000000926:122:80:111#HTH_LUXR:174:0.0000000000000872:226:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015558965::NZ_JADMOZ010000118.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span30510-31250Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015558965::NZ_JADMOZ010000118.1::G00009Context members
I2G74_RS11020
Partner locus tags
I2G74_RS11020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195554664.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G74_RS11020Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMOZ010000118.1Sequence record reported by the local genomic context database.
Genomic interval30 510-31 250 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 510-31 250 ntGCF_015558965::NZ_JADMOZ010000118.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015558965::NZ_JADMOZ010000118.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMOZ010000118.1All displayed genes belong to this local TCS context.
Neighborhood span30 510-31 250 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 510 nt31 250 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2G74_RS11020GCF_015558965#I2G74_RS11020
RRNarLCurrent focus
30 510-31 250 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015558965#I2G74_RS11020The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0777865
Simplified PFAM architecture for RROC_0777865
PFAM domain coverage: 159 / 246 aa (64.6%)
1 aa246 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[19-130] | GerE[175-221]
- Domain count: 2
- Matched identifier: RROC_0777865
- Positioned domains: Response_reg 19-130 ; GerE 175-221
Cluster members and taxonomy
Representative gene: GCF_015558965#I2G74_RS11020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_015558965
AssemblyASM1555896v1 · Contighaploid
Genome composition2 538 011 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 21 · HK 10 · RR 10CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key