1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:4.84e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G53_RS02000
Response regulator OmpR family
Bifidobacterium adolescentis · GCF_015558565
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015558565#I2G53_RS02000Stable P2CS identifier used across views.
GenomeGCF_015558565Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 234 aa (76.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
161-229 aa · 69 aa · 29.5% of protein
Raw token
Trans_reg_C:161:2.83e-32:229:69:77- Raw architecture: Response_reg:4:4.84e-38:113:111:111#Trans_reg_C:161:2.83e-32:229:69:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015558565::NZ_JADMOG010000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span438802-440915Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015558565::NZ_JADMOG010000001.1::G00010Context members
I2G53_RS02000I2G53_RS02005
Partner locus tags
I2G53_RS02000I2G53_RS02005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195537195.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G53_RS02000Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADMOG010000001.1Sequence record reported by the local genomic context database.
Genomic interval438 802-439 506 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span438 802-440 915 ntGCF_015558565::NZ_JADMOG010000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015558565::NZ_JADMOG010000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADMOG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span438 802-440 915 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
438 802 nt440 915 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G53_RS02000GCF_015558565#I2G53_RS02000
RROmpRCurrent focus
438 802-439 506 nt · Reverse (-)
I2G53_RS02005GCF_015558565#I2G53_RS02005
HKClassic
439 506-440 915 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015558565#I2G53_RS02000The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1061266
Simplified PFAM architecture for RROC_1061266
PFAM domain coverage: 179 / 234 aa (76.5%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[160-228]
- Domain count: 2
- Matched identifier: RROC_1061266
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 160-228
Cluster members and taxonomy
Representative gene: GCF_015558565#I2G53_RS02000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_015558565
AssemblyASM1555856v1 · Scaffoldhaploid
Genome composition2 367 927 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 10 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key