1 Response_reg#1
4-113 aa · 110 aa · 21.2% of protein
Raw token
Response_reg:4:1.94e-34:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G42_RS15750
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_015557635
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015557635#I2G42_RS15750Stable P2CS identifier used across views.
GenomeGCF_015557635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage144 / 519 aa (27.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
465-498 aa · 34 aa · 6.6% of protein
Raw token
HTH_AraC:465:0.00000064:498:34:42- Raw architecture: Response_reg:4:1.94e-34:113:110:111#HTH_AraC:465:0.00000064:498:34:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015557635::NZ_JADNOP010000028.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5235-8466Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557635::NZ_JADNOP010000028.1::G00024Context members
I2G42_RS15745I2G42_RS15750
Partner locus tags
I2G42_RS15745I2G42_RS15750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055222158.1Primary protein accession used for annex mappings.
UniProt accessionA0A174VGS5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174VGS5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G42_RS15750Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOP010000028.1Sequence record reported by the local genomic context database.
Genomic interval6 907-8 466 nt1 560 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 235-8 466 ntGCF_015557635::NZ_JADNOP010000028.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557635::NZ_JADNOP010000028.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOP010000028.1All displayed genes belong to this local TCS context.
Neighborhood span5 235-8 466 nt3 232 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 235 nt8 466 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G42_RS15745GCF_015557635#I2G42_RS15745
HKClassic
5 235-6 944 nt · Reverse (-)
I2G42_RS15750GCF_015557635#I2G42_RS15750
RRunclassifiedCurrent focus
6 907-8 466 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS16095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127468
Simplified PFAM architecture for RROC_0127468
PFAM domain coverage: 190 / 519 aa (36.6%)
1 aa519 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[425-503]
- Domain count: 2
- Matched identifier: RROC_0127468
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 425-503 ; HTH_18 425-503
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS16095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_015557635
AssemblyASM1555763v1 · Scaffoldhaploid
Genome composition3 595 263 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 92 · HK 42 · RR 44CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key