1 Response_reg#1
78-144 aa · 67 aa · 45.0% of protein
Raw token
Response_reg:78:0.00000000000000617:144:67:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G42_RS02260
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_015557635
ClassRRTypeunclassifiedLength149 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015557635#I2G42_RS02260Stable P2CS identifier used across views.
GenomeGCF_015557635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length149 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage67 / 149 aa (45.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa149 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:78:0.00000000000000617:144:67:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015557635::NZ_JADNOP010000002.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span75332-75781Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557635::NZ_JADNOP010000002.1::G00026Context members
I2G42_RS02260
Partner locus tags
I2G42_RS02260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243105447.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G42_RS02260Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOP010000002.1Sequence record reported by the local genomic context database.
Genomic interval75 332-75 781 nt450 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span75 332-75 781 ntGCF_015557635::NZ_JADNOP010000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557635::NZ_JADNOP010000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span75 332-75 781 nt450 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 332 nt75 781 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2G42_RS02260GCF_015557635#I2G42_RS02260
RRunclassifiedCurrent focus
75 332-75 781 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557635#I2G42_RS02260The current gene is the representative for this cluster.
PFAM architectureHATPase_c + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2231900
Simplified PFAM architecture for RROC_2231900
PFAM domain coverage: 140 / 149 aa (94.0%)
1 aa149 aa
HATPase_cResponse_reg
- Simplified architecture: HATPase_c + Response_reg
- Raw architecture: HATPase_c[2-75] | Response_reg[78-143]
- Domain count: 2
- Matched identifier: RROC_2231900
- Positioned domains: HATPase_c 2-75 ; Response_reg 78-143
Cluster members and taxonomy
Representative gene: GCF_015557635#I2G42_RS02260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_015557635
AssemblyASM1555763v1 · Scaffoldhaploid
Genome composition3 595 263 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 92 · HK 42 · RR 44CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key