1 HisKA#1
123-189 aa · 67 aa · 19.6% of protein
Raw token
HisKA:123:0.000000016:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G42_RS14040
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_015557635
ClassHKTypeClassicLength342 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015557635#I2G42_RS14040Stable P2CS identifier used across views.
GenomeGCF_015557635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length342 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 342 aa (50.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa342 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
235-341 aa · 107 aa · 31.3% of protein
Raw token
HATPase_c:235:1.2e-27:341:107:109- Raw architecture: HisKA:123:0.000000016:189:67:64#HATPase_c:235:1.2e-27:341:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015557635::NZ_JADNOP010000019.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29623-31337Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557635::NZ_JADNOP010000019.1::G00019Context members
I2G42_RS14040I2G42_RS14045
Partner locus tags
I2G42_RS14040I2G42_RS14045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055056433.1Primary protein accession used for annex mappings.
UniProt accessionA0A174QV41Primary UniProt accession resolved in the annex database.
UniProt IDA0A174QV41_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G42_RS14040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOP010000019.1Sequence record reported by the local genomic context database.
Genomic interval29 623-30 651 nt1 029 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 623-31 337 ntGCF_015557635::NZ_JADNOP010000019.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557635::NZ_JADNOP010000019.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOP010000019.1All displayed genes belong to this local TCS context.
Neighborhood span29 623-31 337 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 623 nt31 337 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G42_RS14040GCF_015557635#I2G42_RS14040
HKClassicCurrent focus
29 623-30 651 nt · Reverse (-)
I2G42_RS14045GCF_015557635#I2G42_RS14045
RROmpR
30 648-31 337 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404435#ARA42_RS03550Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2831828
Simplified PFAM architecture for HKOC_2831828
PFAM domain coverage: 172 / 342 aa (50.3%)
1 aa342 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[125-189] | HATPase_c[235-341]
- Domain count: 2
- Matched identifier: HKOC_2831828
- Positioned domains: HisKA 125-189 ; HATPase_c 235-341
Cluster members and taxonomy
Representative gene: GCF_001404435#ARA42_RS03550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_015557635
AssemblyASM1555763v1 · Scaffoldhaploid
Genome composition3 595 263 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 92 · HK 42 · RR 44CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key