1 Response_reg#1
1-84 aa · 84 aa · 96.6% of protein
Raw token
Response_reg:1:6.94e-20:84:84:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G42_RS09815
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_015557635
ClassRRTypeCheYLength87 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015557635#I2G42_RS09815Stable P2CS identifier used across views.
GenomeGCF_015557635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length87 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage84 / 87 aa (96.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa87 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:6.94e-20:84:84:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015557635::NZ_JADNOP010000010.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span60430-60693Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557635::NZ_JADNOP010000010.1::G00002Context members
I2G42_RS09815
Partner locus tags
I2G42_RS09815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242856659.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G42_RS09815Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOP010000010.1Sequence record reported by the local genomic context database.
Genomic interval60 430-60 693 nt264 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span60 430-60 693 ntGCF_015557635::NZ_JADNOP010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557635::NZ_JADNOP010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOP010000010.1All displayed genes belong to this local TCS context.
Neighborhood span60 430-60 693 nt264 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 430 nt60 693 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2G42_RS09815GCF_015557635#I2G42_RS09815
RRCheYCurrent focus
60 430-60 693 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS13580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2474699
Simplified PFAM architecture for RROC_2474699
PFAM domain coverage: 83 / 87 aa (95.4%)
1 aa87 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[2-84]
- Domain count: 1
- Matched identifier: RROC_2474699
- Positioned domains: Response_reg 2-84 ; Response_reg 2-84
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS13580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_015557635
AssemblyASM1555763v1 · Scaffoldhaploid
Genome composition3 595 263 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 92 · HK 42 · RR 44CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key