1 Response_reg#1
4-111 aa · 108 aa · 20.3% of protein
Raw token
Response_reg:4:1.6e-31:111:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G42_RS06400
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_015557635
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015557635#I2G42_RS06400Stable P2CS identifier used across views.
GenomeGCF_015557635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 531 aa (27.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
405-444 aa · 40 aa · 7.5% of protein
Raw token
HTH_AraC:405:0.0000000189:444:40:42- Raw architecture: Response_reg:4:1.6e-31:111:108:111#HTH_AraC:405:0.0000000189:444:40:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015557635::NZ_JADNOP010000006.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span8139-9734Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557635::NZ_JADNOP010000006.1::G00047Context members
I2G42_RS06400
Partner locus tags
I2G42_RS06400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195530870.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G42_RS06400Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOP010000006.1Sequence record reported by the local genomic context database.
Genomic interval8 139-9 734 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 139-9 734 ntGCF_015557635::NZ_JADNOP010000006.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557635::NZ_JADNOP010000006.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOP010000006.1All displayed genes belong to this local TCS context.
Neighborhood span8 139-9 734 nt1 596 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 139 nt9 734 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2G42_RS06400GCF_015557635#I2G42_RS06400
RRunclassifiedCurrent focus
8 139-9 734 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557635#I2G42_RS06400The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110424
Simplified PFAM architecture for RROC_0110424
PFAM domain coverage: 178 / 531 aa (33.5%)
1 aa531 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[418-484]
- Domain count: 2
- Matched identifier: RROC_0110424
- Positioned domains: Response_reg 4-114 ; HTH_18 418-484
Cluster members and taxonomy
Representative gene: GCF_015557635#I2G42_RS06400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_015557635
AssemblyASM1555763v1 · Scaffoldhaploid
Genome composition3 595 263 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 92 · HK 42 · RR 44CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key