1 HisKA#1
197-260 aa · 64 aa · 15.2% of protein
Raw token
HisKA:197:0.0000000663:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G42_RS05540
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_015557635
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015557635#I2G42_RS05540Stable P2CS identifier used across views.
GenomeGCF_015557635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 421 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-418 aa · 110 aa · 26.1% of protein
Raw token
HATPase_c:309:1.02e-30:418:110:109- Raw architecture: HisKA:197:0.0000000663:260:64:64#HATPase_c:309:1.02e-30:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015557635::NZ_JADNOP010000005.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26587-28517Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557635::NZ_JADNOP010000005.1::G00046Context members
I2G42_RS05535I2G42_RS05540
Partner locus tags
I2G42_RS05535I2G42_RS05540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055227092.1Primary protein accession used for annex mappings.
UniProt accessionA0A174C8V0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174C8V0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G42_RS05540Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOP010000005.1Sequence record reported by the local genomic context database.
Genomic interval27 252-28 517 nt1 266 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 587-28 517 ntGCF_015557635::NZ_JADNOP010000005.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557635::NZ_JADNOP010000005.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOP010000005.1All displayed genes belong to this local TCS context.
Neighborhood span26 587-28 517 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 587 nt28 517 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G42_RS05535GCF_015557635#I2G42_RS05535
RROmpR
26 587-27 276 nt · Forward (+)
I2G42_RS05540GCF_015557635#I2G42_RS05540
HKClassicCurrent focus
27 252-28 517 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS06025Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2257447
Simplified PFAM architecture for HKOC_2257447
PFAM domain coverage: 175 / 421 aa (41.6%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[197-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2257447
- Positioned domains: HisKA 197-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS06025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_015557635
AssemblyASM1555763v1 · Scaffoldhaploid
Genome composition3 595 263 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 92 · HK 42 · RR 44CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key