1 HisKA#1
437-504 aa · 68 aa · 10.2% of protein
Raw token
HisKA:437:0.00000000000125:504:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G42_RS03135
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_015557635
ClassHKTypeClassicLength665 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_015557635#I2G42_RS03135Stable P2CS identifier used across views.
GenomeGCF_015557635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length665 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 665 aa (27.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa665 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
548-660 aa · 113 aa · 17.0% of protein
Raw token
HATPase_c:548:4.23e-30:660:113:109- Raw architecture: HisKA:437:0.00000000000125:504:68:64#HATPase_c:548:4.23e-30:660:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_015557635::NZ_JADNOP010000002.1::G00030
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span277476-279473Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557635::NZ_JADNOP010000002.1::G00030Context members
I2G42_RS03135
Partner locus tags
I2G42_RS03135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_238061486.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G42_RS03135Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOP010000002.1Sequence record reported by the local genomic context database.
Genomic interval277 476-279 473 nt1 998 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span277 476-279 473 ntGCF_015557635::NZ_JADNOP010000002.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557635::NZ_JADNOP010000002.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span277 476-279 473 nt1 998 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
277 476 nt279 473 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
I2G42_RS03135GCF_015557635#I2G42_RS03135
HKClassicCurrent focus
277 476-279 473 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557635#I2G42_RS03135The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0859111
Simplified PFAM architecture for HKOC_0859111
PFAM domain coverage: 285 / 665 aa (42.9%)
1 aa665 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[166-272] | HisKA[438-504] | HATPase_c[549-659]
- Domain count: 3
- Matched identifier: HKOC_0859111
- Positioned domains: DUF4118 166-272 ; HisKA 438-504 ; HATPase_c 549-659
Cluster members and taxonomy
Representative gene: GCF_015557635#I2G42_RS03135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_015557635
AssemblyASM1555763v1 · Scaffoldhaploid
Genome composition3 595 263 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 92 · HK 42 · RR 44CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key