1 Response_reg#1
4-116 aa · 113 aa · 46.3% of protein
Raw token
Response_reg:4:2.33e-23:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G42_RS02675
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_015557635
ClassRRTypeunclassifiedLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015557635#I2G42_RS02675Stable P2CS identifier used across views.
GenomeGCF_015557635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 244 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
148-189 aa · 42 aa · 17.2% of protein
Raw token
HTH_AraC:148:0.000069:189:42:423 HTH_AraC#3
203-238 aa · 36 aa · 14.8% of protein
Raw token
HTH_AraC:203:0.000000425:238:36:42- Raw architecture: Response_reg:4:2.33e-23:116:113:111#HTH_AraC:148:0.000069:189:42:42#HTH_AraC:203:0.000000425:238:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015557635::NZ_JADNOP010000002.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span164800-167203Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557635::NZ_JADNOP010000002.1::G00028Context members
I2G42_RS02675I2G42_RS02680
Partner locus tags
I2G42_RS02675I2G42_RS02680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_195530701.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G42_RS02675Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOP010000002.1Sequence record reported by the local genomic context database.
Genomic interval164 800-165 534 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span164 800-167 203 ntGCF_015557635::NZ_JADNOP010000002.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557635::NZ_JADNOP010000002.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span164 800-167 203 nt2 404 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
164 800 nt167 203 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G42_RS02675GCF_015557635#I2G42_RS02675
RRunclassifiedCurrent focus
164 800-165 534 nt · Reverse (-)
I2G42_RS02680GCF_015557635#I2G42_RS02680
HKClassic
165 551-167 203 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557635#I2G42_RS02675The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0814002
Simplified PFAM architecture for RROC_0814002
PFAM domain coverage: 187 / 244 aa (76.6%)
1 aa244 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[165-239]
- Domain count: 2
- Matched identifier: RROC_0814002
- Positioned domains: Response_reg 4-115 ; HTH_18 165-239
Cluster members and taxonomy
Representative gene: GCF_015557635#I2G42_RS02675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_015557635
AssemblyASM1555763v1 · Scaffoldhaploid
Genome composition3 595 263 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 92 · HK 42 · RR 44CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key