1 Response_reg#1
3-75 aa · 73 aa · 86.9% of protein
Raw token
Response_reg:3:4.56e-18:75:73:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G42_RS02310
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_015557635
ClassRRTypeCheYLength84 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_015557635#I2G42_RS02310Stable P2CS identifier used across views.
GenomeGCF_015557635Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
External referencesMIST4 I2G42_RS02310MIST4
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length84 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage73 / 84 aa (86.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa84 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:4.56e-18:75:73:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_015557635::NZ_JADNOP010000002.1::G00027
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span81797-87416Genomic interval covered by the local TCS group.
Context group ID
GCF_015557635::NZ_JADNOP010000002.1::G00027Context members
I2G42_RS02295I2G42_RS02305I2G42_RS02310
Partner locus tags
I2G42_RS02295I2G42_RS02305I2G42_RS02310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G42_RS02310Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOP010000002.1Sequence record reported by the local genomic context database.
Genomic interval87 135-87 416 nt282 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 797-87 416 ntGCF_015557635::NZ_JADNOP010000002.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557635::NZ_JADNOP010000002.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span81 797-87 416 nt5 620 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 797 nt87 416 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
I2G42_RS02295GCF_015557635#I2G42_RS02295
HKHybrid
81 797-83 719 nt · Reverse (-)
I2G42_RS02305GCF_015557635#I2G42_RS02305
HKHybrid
84 069-86 942 nt · Reverse (-)
I2G42_RS02310GCF_015557635#I2G42_RS02310
RRCheYCurrent focus
87 135-87 416 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015557635#I2G42_RS02310The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2475394
Simplified PFAM architecture for RROC_2475394
PFAM domain coverage: 73 / 84 aa (86.9%)
1 aa84 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-75]
- Domain count: 1
- Matched identifier: RROC_2475394
- Positioned domains: Response_reg 3-75
Cluster members and taxonomy
Representative gene: GCF_015557635#I2G42_RS02310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_015557635
AssemblyASM1555763v1 · Scaffoldhaploid
Genome composition3 595 263 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 92 · HK 42 · RR 44CheA 0 · PP 6
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key