1 Response_reg#1
7-113 aa · 107 aa · 48.0% of protein
Raw token
Response_reg:7:4.58e-25:113:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I2G32_RS16050
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_015557345
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_015557345#I2G32_RS16050Stable P2CS identifier used across views.
GenomeGCF_015557345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:146:3.78e-22:219:78:77- Raw architecture: Response_reg:7:4.58e-25:113:107:111#Trans_reg_C:146:3.78e-22:219:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_015557345::NZ_JADNOC010000043.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span909-2764Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_015557345::NZ_JADNOC010000043.1::G00040Context members
I2G32_RS16050I2G32_RS16055
Partner locus tags
I2G32_RS16050I2G32_RS16055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055221923.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI2G32_RS16050Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JADNOC010000043.1Sequence record reported by the local genomic context database.
Genomic interval909-1 580 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span909-2 764 ntGCF_015557345::NZ_JADNOC010000043.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_015557345::NZ_JADNOC010000043.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JADNOC010000043.1All displayed genes belong to this local TCS context.
Neighborhood span909-2 764 nt1 856 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
909 nt2 764 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I2G32_RS16050GCF_015557345#I2G32_RS16050
RROmpRCurrent focus
909-1 580 nt · Forward (+)
I2G32_RS16055GCF_015557345#I2G32_RS16055
HKClassic
1 577-2 764 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875795#GT575_RS02465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1604945
Simplified PFAM architecture for RROC_1604945
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1604945
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 147-219 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_009875795#GT575_RS02465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_015557345
AssemblyASM1555734v1 · Scaffoldhaploid
Genome composition3 548 074 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 88 · HK 43 · RR 45CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key